Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1140549	1140695	147	53 [0]	[0] 45	flgK	flagellar hook‑filament junction protein 1

GCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTG  >  W3110S.gb/1140487‑1140548                                                              | gCCTGAACGATCAAATCTCGCGCCTTACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:710973/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:556350/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:276657/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:286198/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:287954/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:302276/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:317279/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:411439/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:422384/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:436475/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:44262/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:492269/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:521716/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:537177/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:256528/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:556498/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:580764/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:597281/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:65091/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:674409/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:731792/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:754704/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:82977/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:84948/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:908865/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:999360/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1297292/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1020393/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1047726/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1091305/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:115473/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1179350/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1186512/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1241245/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1245035/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1268712/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:127472/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1019801/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1304454/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1309424/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:137366/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1385207/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1400319/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1400654/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1449742/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:148556/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:156795/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:223078/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:228850/62‑1 (MQ=255) gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:24169/62‑1 (MQ=255)  ccTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1261804/61‑1 (MQ=255)         gATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:991979/54‑1 (MQ=255)                      gcCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATctg  <  1:1072541/41‑1 (MQ=255)                                                              | GCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTG  >  W3110S.gb/1140487‑1140548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑