Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006425	2006555	131	35 [0]	[0] 7	fliD	flagellar filament capping protein

ACGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAT  >  W3110S.gb/2006363‑2006424                                                              | aCGGCGATCGCCACCAGCGACAGTAAGCTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1342833/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:345533/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:336284/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:367343/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:382721/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:438547/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:478922/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:484636/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:53452/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:69822/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:722292/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:74943/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:814481/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:856372/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:895417/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:900307/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:911765/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:175679/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1114601/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:111789/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1144450/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:129158/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1318390/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1365207/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1077731/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:186443/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:204714/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:239013/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:270437/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:293305/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:326110/62‑1 (MQ=255) aCGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAACGCGGCGACAAAGATCCGAt  <  1:1247252/62‑1 (MQ=255)    gCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:1292104/59‑1 (MQ=255)            caccaGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:385405/51‑1 (MQ=255)                      aGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAt  <  1:400503/41‑1 (MQ=255)                                                              | ACGGCGATCGCCACCAGCGACAGTAAACTCACCATTCAACAAGGCGGCGACAAAGATCCGAT  >  W3110S.gb/2006363‑2006424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑