Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006729	2006768	40	33 [0]	[0] 58	fliD	flagellar filament capping protein

GCCGCCCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACC  >  W3110S.gb/2006669‑2006728                                                            | gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:680775/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:333565/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:340965/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:383043/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:445486/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:562177/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:59200/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:619408/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:630233/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:309084/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:728710/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:730594/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:743902/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:763654/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:787369/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:833638/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:959029/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1003513/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:195092/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1462899/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1444191/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1364696/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1322741/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1319003/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1291642/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1195748/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1137537/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1117408/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1103893/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1088990/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1085237/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACAcc  >  1:1084033/1‑60 (MQ=255) gccgccCAGAATGCGCAGCTGACAGTCAACAACGTCGCCACCGAGAACAGCAGCAACAcc  >  1:1213856/1‑60 (MQ=255)                                                            | GCCGCCCAGAATGCGCAGCTGACAGTCAACAACGTCGCCATCGAGAACAGCAGCAACACC  >  W3110S.gb/2006669‑2006728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑