Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006729	2006768	40	33 [0]	[0] 58	fliD	flagellar filament capping protein

ATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCG  >  W3110S.gb/2006769‑2006830 |                                                              aTGTCACCTCGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGTCg  <  1:233886/62‑1 (MQ=255) aTGTCACCAGGTGCATCCAGACGCTAACCTTCACTCAGGACACCTCCAAAGCGCATACGGCg  <  1:884311/62‑1 (MQ=255) aTGTCACCACGGGCGACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:224131/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGTCg  <  1:243804/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:579416/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:380736/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:42416/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:427600/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:449582/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:450190/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:490901/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:534063/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:534211/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:557316/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:568247/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:568588/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:327791/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:598203/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:600958/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:615154/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:641067/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:675788/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:69849/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:744280/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:916551/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:927436/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:95279/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:983945/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:99197/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:997135/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1292707/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1058343/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1072799/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1106630/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:112482/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1153760/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1187651/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1193306/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1232112/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1233295/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1233875/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1235311/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1243695/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:377089/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1306229/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1308815/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1311426/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1411352/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1418707/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1435986/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:201266/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:240495/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:292248/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:300972/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:31214/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:316631/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCg  <  1:1005544/62‑1 (MQ=255) aTGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCCCCAAAGCGCAAACGGCg  <  1:844275/62‑1 (MQ=255) |                                                              ATGTCACCACGGGCAACCAGACGCTAACCATCACTCAGGACACCTCCAAAGCGCAAACGGCG  >  W3110S.gb/2006769‑2006830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑