Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2100188	2100340	153	33 [0]	[0] 60	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

CAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCA  >  W3110S.gb/2100126‑2100187                                                              | catagaAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:790841/59‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCTACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:682883/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:533510/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:995027/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:89858/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:833090/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:827425/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:730383/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:713441/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:686764/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:682260/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:63192/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:605966/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:594640/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1024597/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1455378/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1031183/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1077220/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1113044/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1242040/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1301616/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1308702/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:213912/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:214420/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:247384/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:254386/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTATCGGTGCa  <  1:608973/62‑1 (MQ=255) cAGAGAAGGCAGAACTGAAGCGACCAAATAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:485266/62‑1 (MQ=255) cAGAGAAGGCAGAACT‑AAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:525385/61‑1 (MQ=255)  agagAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:613570/61‑1 (MQ=255)  agagAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:1139795/61‑1 (MQ=255)   gagaAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCa  <  1:653044/60‑1 (MQ=255)             aaCTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTATCGGTGCa  <  1:1046277/50‑1 (MQ=255)                                                              | CAGAGAAGGCAGAACTGAAGCGACCAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCA  >  W3110S.gb/2100126‑2100187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑