Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2100188	2100340	153	33 [0]	[0] 60	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

GTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGG  >  W3110S.gb/2100341‑2100397 |                                                         gTCATCTTGCCACGGCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:204586/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCgggg  <  1:636854/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1021781/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:484667/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:487510/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:497899/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:507953/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:510642/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:534004/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:58093/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:601451/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:605582/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:624427/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:625169/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:631119/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:635972/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:684299/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:690599/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:714203/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:746409/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:766033/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:852275/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:858271/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:870235/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:886899/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:887637/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:910953/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:921311/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:931117/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:968164/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1417720/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1110044/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1128108/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1138599/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1156971/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:117751/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1240658/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1305206/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:13110/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1335728/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1336595/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1397874/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1405405/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:1410368/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:423031/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:153855/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:163279/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:191670/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:203748/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:239662/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:258611/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:274102/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:285663/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:290441/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:324854/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:382862/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:415271/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCggg  <  1:421782/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATATGTTCCggg  <  1:891773/57‑1 (MQ=255) gTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATC‑AATCAATCTGTTCCggg  <  1:543147/56‑1 (MQ=255) |                                                         GTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGG  >  W3110S.gb/2100341‑2100397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑