Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074038	2074690	653	34 [0]	[1] 63	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

CGCCTGGGAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAT  >  W3110S.gb/2074654‑2074752                                      |                                                              cGCCTGGGAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCgg                                       <  1:1304756/62‑1 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGacaca             >  1:200591/1‑51 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:516061/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:204761/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:24538/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:255312/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:301465/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:3325/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:332958/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:376769/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:413553/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:421324/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:424621/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:431102/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:46925/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:492206/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:183208/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:544174/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:545472/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:593082/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:620386/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:691378/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:738202/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:763433/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:765371/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:800041/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:800485/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:823507/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:854994/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:94736/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:95991/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:9714/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1296555/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1070552/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1079596/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:108865/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1092081/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1124739/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:112675/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1143626/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1211570/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1262736/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1268924/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1270890/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1279216/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1282377/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1291450/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:196857/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1298830/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1303551/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1344904/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1347006/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1394081/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1410074/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1425736/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1430375/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1449342/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:162674/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:172038/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1057031/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCAATaa   >  1:1184669/1‑61 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATATGCTGACCGGACACACAGCCACTAAt  >  1:1426958/1‑62 (MQ=255)                                      aTAATGTCGTACTGGAAAATGGCGGAAGCCTGGATGTGCTGACCGGACACACAGCCACTAAt  >  1:1451941/1‑62 (MQ=255)                                      |                                                              CGCCTGGGAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAAT  >  W3110S.gb/2074654‑2074752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑