New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2018571 =	2 (0.070)	11 (0.410)	4/102	0.3	85.4%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase

TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGG  >  W3110S.gb/2018513‑2018621                                                           |                                                   tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg                                                  >  1:3092507‑M1/59‑61 (MQ=255) tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg                                                  >  1:1364663‑M1/59‑61 (MQ=255) tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg                                                  >  1:323460‑M1/59‑61 (MQ=255) tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg                                                  >  1:2157483‑M1/59‑61 (MQ=255)        cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                          >  1:1363229‑M1/52‑62 (MQ=255)        cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCa                                          >  1:1920819‑M1/52‑62 (MQ=255)              tgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATc                                             <  1:367505/53‑1 (MQ=255)              tgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATc                                             <  1:2083659/53‑1 (MQ=255)                          gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc                         >  1:2813509‑M1/34‑61 (MQ=255)                          gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc                         >  1:2494481‑M1/34‑61 (MQ=255)                          gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc                         >  1:1517746‑M1/34‑61 (MQ=255)                          gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcggc                         >  1:1263124‑M1/34‑61 (MQ=255)                                 accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGt                 >  1:1812451‑M1/27‑62 (MQ=255)                                 accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGt                 >  1:2353421‑M1/27‑62 (MQ=255)                                         ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg         <  1:1556885‑M1/44‑1 (MQ=255)                                         ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg         <  1:1008371‑M1/44‑1 (MQ=255)                                         ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg         <  1:1144467‑M1/44‑1 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaat   >  1:446712‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaat   >  1:78641‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaat   >  1:2249428‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaat   >  1:933099‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaat   >  1:2786748‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa    >  1:2395925‑M1/1‑25 (MQ=255)                                               ctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa    >  1:2677556‑M1/1‑25 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:2916125‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:2966541‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:2406715‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:2130371‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:426386‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:71583‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:1428664‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:140805‑M1/62‑39 (MQ=255)                                                tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg  <  1:993002‑M1/62‑39 (MQ=255)                                                         cGGGGCGATCCCTCCataagggctaacttaagggttgaacaatctgaagaatg  <  1:1883379‑M1/53‑39 (MQ=255)                                                           |                                                   TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGG  >  W3110S.gb/2018513‑2018621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.