| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 2 (0.070) | 11 (0.410) | 4/102 | 0.3 | 85.4% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
GCAGCACTGGTGCTGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > W3110S.gb/2519673‑2519775 | gcagcaCTTGTGCTGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAAc < 1:1480390/62‑1 (MQ=255) tGGTGCTGTAAGACCATACATTAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAgg > 1:1238052/1‑62 (MQ=255) tGGTGCTGTAAGACCATACATTAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAgg > 1:2648316/1‑62 (MQ=255) tGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgt > 1:2562869/1‑60 (MQ=255) tGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg > 1:1889210/1‑62 (MQ=255) tGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg > 1:2521799/1‑62 (MQ=255) aGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1736942/62‑1 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:1542619/56‑1 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:2459359/56‑1 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT‑TGGTATTACGCCt < 1:2655218/55‑1 (MQ=255) aaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAGGCCTGATATGAt < 1:258051/62‑1 (MQ=255) aaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:2667738/62‑1 (MQ=255) aaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:1748230/62‑1 (MQ=255) aaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt < 1:739421/61‑1 (MQ=255) gCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:579652/62‑1 (MQ=255) gCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 1:1631465/62‑1 (MQ=255) cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 1:3051607/1‑62 (MQ=40) cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc > 1:2665910/1‑62 (MQ=40) aTAATTCCCATAAGCGCTAACTTAATGGTTGTGGTATTACGACTGATATGATTTAAGGTGcc < 1:347823/62‑1 (MQ=14) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:740043/62‑1 (MQ=39) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:2417389/62‑1 (MQ=39) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:2319262/62‑1 (MQ=39) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:2098219/62‑1 (MQ=39) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:2089964/62‑1 (MQ=39) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGcc < 1:1312497/62‑1 (MQ=39) | GCAGCACTGGTGCTGTAAGACCATACA‑TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC > W3110S.gb/2519673‑2519775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |