New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2412225	NA (NA)	47 (1.660)	9/108	0.1	85.5%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/predicted aminotransferase
	?	W3110S.gb	= 3748807	8 (0.280)					coding (176/984 nt)	tnaB	tryptophan transporter of low affinity

GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA  >  W3110S.gb/2412172‑2412276                                                      |                                                    ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:974390/62‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:1200292/62‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:272761/62‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:1638018/62‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:1664377/62‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:166639/62‑1 (MQ=255)        cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:1217065/55‑1 (MQ=255)        cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa                                           >  1:930119/1‑57 (MQ=255)        cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa                                           >  1:2330009/1‑57 (MQ=255)        cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcat                                      >  1:1966988/1‑61 (MQ=255)             aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt                                   <  1:2832030/60‑1 (MQ=255)             aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt                                   <  1:1592252/60‑1 (MQ=255)              aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt                                <  1:2390999/62‑1 (MQ=255)              aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt                                <  1:2098840/62‑1 (MQ=255)                      catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtata                        >  1:2474896/1‑62 (MQ=255)                      catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtata                        >  1:95124/1‑62 (MQ=255)                      catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtata                        >  1:1715628/1‑62 (MQ=255)                       atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc                                             <  1:2866547/40‑1 (MQ=255)                          cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt                                <  1:313856/50‑1 (MQ=255)                            cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt                                   <  1:873588/45‑1 (MQ=255)                                     tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGa          >  1:1929235/1‑61 (MQ=255)                                     tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt         >  1:796679/1‑62 (MQ=255)                                     tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt         >  1:1880808/1‑62 (MQ=255)                                     tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt         >  1:2544256/1‑62 (MQ=255)                                     tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt         >  1:1279697/1‑62 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:866979/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:1129528/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:709560/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:458632/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:969659/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:1973286/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:282209/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:1391701/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2827002/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2525840/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2062606/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2264364/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2275998/1‑57 (MQ=255)                                                 aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa  >  1:2314441/1‑57 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCTTTATAATGCCTGAAGTAGATca       <  1:111479/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:2385330/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:1017223/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:640748/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:573815/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:2122878/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:9545/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:468660/49‑1 (MQ=255)                                                    aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca       <  1:327690/49‑1 (MQ=255)                                                      |                                                    GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAA  >  W3110S.gb/2412172‑2412276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.