Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1134097	1134100	4	26 [0]	[0] 8	flgD	flagellar hook assembly protein

ACAGCGGTAATACGCTGGATCTCGGCACTTACGGCACCACC  >  W3110S.gb/1134056‑1134096                                         | aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:272528/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:875051/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:762089/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:728226/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:64316/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:565468/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:54183/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:33387/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:3017089/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2978303/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2884627/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2868995/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:273513/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1068813/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2615517/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2595446/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2556203/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2545938/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:2516415/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:229992/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1851361/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1837684/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1767992/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1704716/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1695538/1‑41 (MQ=255) aCAGCGGTAATACGCTGGATCTCGGCACTTACGGcaccacc  >  1:1592656/1‑41 (MQ=255)                                         | ACAGCGGTAATACGCTGGATCTCGGCACTTACGGCACCACC  >  W3110S.gb/1134056‑1134096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑