Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1134097	1134100	4	26 [0]	[0] 8	flgD	flagellar hook assembly protein

TCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGAGTCAGT  >  W3110S.gb/1134101‑1134149 |                                                 tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:1254056/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:1600857/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:1603305/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:1725959/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:1863758/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:2034388/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:2869639/1‑49 (MQ=255) tCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGagtcagt  >  1:59744/1‑49 (MQ=255) |                                                 TCGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGAGTCAGT  >  W3110S.gb/1134101‑1134149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑