Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003321	2003353	33	14 [0]	[0] 8	fliA	RNA polymerase, sigma 28 (sigma F) factor

TGACTGACCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTC  >  W3110S.gb/2003259‑2003320                                                              | tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:1221523/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:1329916/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:1625910/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2037349/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2461030/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2480828/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2547565/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2622627/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2636066/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2671491/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:2713289/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:381993/62‑1 (MQ=255) tgactgacCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:820212/62‑1 (MQ=255)              aTTCCCCTACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTc  <  1:1078511/49‑1 (MQ=255)                                                              | TGACTGACCCGCGATTCCCCGACCTCCAGCACCGCGCCAATCTCTTTGAGATTCAGCTCTTC  >  W3110S.gb/2003259‑2003320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑