Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2004921	2004932	12	12 [0]	[0] 32	fliC	flagellar filament structural protein

TGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTT  >  W3110S.gb/2004859‑2004920                                                              | tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:1273417/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:1508250/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:1528526/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:1543452/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:21125/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:2138611/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:225062/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:2586970/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:2641196/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:2725472/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:41573/62‑1 (MQ=255) tGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCtt  <  1:88738/62‑1 (MQ=255)                                                              | TGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTT  >  W3110S.gb/2004859‑2004920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑