Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2004921	2004932	12	12 [0]	[0] 32	fliC	flagellar filament structural protein

CATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCA  >  W3110S.gb/2004933‑2004994 |                                                              cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCAt                        >  1:919213/1‑40 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCAt                        >  1:2419485/1‑40 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCAc                  >  1:2179998/1‑46 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACcatcat       >  1:648763/1‑57 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGc   >  1:766328/1‑61 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGc   >  1:2800146/1‑61 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:828076/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:785228/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:77869/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:72284/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:635233/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:4461/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2605486/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2601259/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2558822/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2426078/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2362056/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1102944/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2344945/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2297523/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2267148/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2210343/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2192366/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2092710/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:2022484/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1903458/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1497648/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1483781/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1442735/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1325496/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:1146703/1‑62 (MQ=255) cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCa  >  1:113692/1‑62 (MQ=255) |                                                              CATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCA  >  W3110S.gb/2004933‑2004994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑