Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2017444	2017606	163	16 [0]	[0] 34	fliG	flagellar motor switching and energizing component

TCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCG  >  W3110S.gb/2017382‑2017443                                                              | tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1173846/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1184556/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1871041/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:2056485/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:218334/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:476465/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:645235/62‑1 (MQ=255) tCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCACGCCCAAgccg  <  1:475663/62‑1 (MQ=255) tCGCGATGAGCATACGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:163039/62‑1 (MQ=255)  cgcgATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCTCGCCCAAgccg  <  1:775589/61‑1 (MQ=255)  cgcgATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1179843/61‑1 (MQ=255)  cgcgATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1766031/61‑1 (MQ=255)  cgcgATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:2664547/61‑1 (MQ=255)         aGCATCCGCAAATTATCGCCACCATTCTCGTGCATCTGAAGCGCGCCCAAgccg  <  1:202359/54‑1 (MQ=255)                  aaaTTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1549645/45‑1 (MQ=255)                           ccaccaTTCTGGTGCATCTGAAGCGCGCCCAAgccg  <  1:1821344/36‑1 (MQ=255)                                                              | TCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCG  >  W3110S.gb/2017382‑2017443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑