Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3532841	3532852	12	29 [0]	[0] 29	cpxA	sensory histidine kinase in two‑component regulatory system with CpxR

CGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACG  >  W3110S.gb/3532780‑3532840                                                             | ggTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1963104/60‑1 (MQ=255) cGTAATGCTCTGCGTTGTTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:148484/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2684347/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:998374/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:92255/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:886679/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:863391/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:861671/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:807535/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:785682/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:762066/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:738093/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:493135/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2868926/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2868393/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2827141/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2816869/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:124185/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2618065/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2589591/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2247869/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2239950/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1895052/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1877218/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1652546/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1506809/61‑1 (MQ=255) cGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:132680/61‑1 (MQ=255)  gTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:1454068/60‑1 (MQ=255)                   tCCAATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACg  <  1:2541527/43‑1 (MQ=255)                                                             | CGTAATGCTCTGCGTTATTCCCATACGAAGATTGAAGTGGGCTTTGCGGTAGATAAAGACG  >  W3110S.gb/3532780‑3532840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑