Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4538639	4538681	43	30 [0]	[0] 51	yjhX	conserved hypothetical protein

TTTTTTGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCAA  >  W3110S.gb/4538577‑4538638                                                              | ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2321824/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:980971/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:90147/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:661132/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:605967/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:469607/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:465254/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:441847/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:408958/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:303366/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2813239/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2746630/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:27045/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2539599/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1091507/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2241338/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1916068/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1873750/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1730116/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1697011/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1641328/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1590752/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1479682/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1385053/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:126000/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1249600/62‑1 (MQ=255) ttttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:110247/62‑1 (MQ=255)  tttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1726763/61‑1 (MQ=255)  tttttGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:1674643/61‑1 (MQ=255)                       cAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCaa  <  1:2732254/40‑1 (MQ=255)                                                              | TTTTTTGAAGACGGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCAA  >  W3110S.gb/4538577‑4538638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑