Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006371	2006396	26	24 [0]	[0] 39	fliD	flagellar filament capping protein

TTCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTA  >  W3110S.gb/2006397‑2006458 |                                                              ttCAACTAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2600566/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTATCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:311225/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGc               >  1:1382437/1‑49 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTATCTCATCGTTa  >  1:161600/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGtt   >  1:118460/1‑61 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGtt   >  1:1766925/1‑61 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2060037/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1935635/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2103629/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2521451/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2602147/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2643120/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2691477/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2693043/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:2723549/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:308141/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:382663/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:40062/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:400912/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:429280/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:546045/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:826277/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1722185/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1045128/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1261920/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1408255/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1484289/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1518685/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1553511/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1561492/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:198430/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1733598/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1795141/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1796480/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1881622/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1930100/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1030137/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTa  >  1:1982534/1‑62 (MQ=255) ttCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCAACGTTa  >  1:1101688/1‑62 (MQ=255) |                                                              TTCAACAAGGCGGCGACAAAGATCCGATTACCATTGATATCAGCGCGGCTAACTCATCGTTA  >  W3110S.gb/2006397‑2006458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑