Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074110	2074165	56	18 [0]	[0] 24	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

CCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACG  >  W3110S.gb/2074166‑2074227 |                                                              ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAAc   >  1:1617259/1‑61 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAAc   >  1:2205818/1‑61 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2008867/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:922466/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:793957/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:662012/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2874021/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2742714/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2639328/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:263290/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2509902/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:223855/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:2112992/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1104487/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1955486/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1916001/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1908532/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1798062/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1786512/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1657047/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1649926/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1543104/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1505103/1‑62 (MQ=255) ccACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACg  >  1:1158622/1‑62 (MQ=255) |                                                              CCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAGCCCGGTACAGTGGCAACG  >  W3110S.gb/2074166‑2074227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑