Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3844431	3844442	12	29 [0]	[0] 8	[rfaC]–[rfaF]	[rfaC],[rfaF]

CAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTC  >  W3110S.gb/3844443‑3844504 |                                                              cAGGCTTCCTCTTGTAACAATATCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:2653918/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:1423563/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:1516529/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:1787473/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:1849605/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:2204496/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:387051/62‑1 (MQ=255) cAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTc  <  1:888922/62‑1 (MQ=255) |                                                              CAGGCTTCCTCTTGTAACAATAGCGCGTTGAGTTCTTCCAGTACGCGCTGGGGAGTAATGTC  >  W3110S.gb/3844443‑3844504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑