Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	248796	248887	92	7 [0]	[1] 28	fhiA	ECK0230:JW5811:b0229; flagellar system protein, promoterless fragment

AGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAA  >  W3110S.gb/248845‑248949                                            |                                                              aGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTcgacg                                              >  1:154579/1‑61 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2373598/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:98966/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:944845/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:923403/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:827845/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:798778/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:680051/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2885526/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2734228/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2718008/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2688396/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2642482/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2612146/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2582046/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1005307/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2370274/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2246074/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2232807/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2132867/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:2127578/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1985213/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1790883/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1768649/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1447611/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1326497/62‑1 (MQ=255)                                            gACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:1157841/62‑1 (MQ=255)                                            gACACGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACaaa  <  1:227106/62‑1 (MQ=255)                                            |                                                              AGCAACTGGCTGTAATTGAGCGCCGCGCTCAAATCTTCCGCCAGACGCGGTGCCGTCGACGATAAACGGTTATGCAACTGCGTAATATCATCATAGTTAAACAAA  >  W3110S.gb/248845‑248949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑