Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1247498	1247584	87	16 [0]	[0] 46	treA	periplasmic trehalase

GTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGG  >  W3110S.gb/1247585‑1247641 |                                                         gTAACGGTGCCCAGCCATTTGGCGCTTCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:369422/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:453416/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1077741/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:24636/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2472092/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2527035/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2765202/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2865673/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2914638/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:298924/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:400092/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:447419/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2208019/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:456507/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:488633/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:619367/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:667920/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:694648/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:760135/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:773390/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:854149/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:917434/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:951761/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1822670/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1239562/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1243336/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1261960/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1301701/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1314048/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1442431/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1557851/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1617387/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1643216/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:182180/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2167281/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1853415/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1884540/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:1892221/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2007971/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2079584/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:208804/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2100230/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2103118/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2105598/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACgtgg  <  1:2160827/57‑1 (MQ=255) gTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTCGCCCACTTTTCACCGACgtgg  <  1:808025/57‑1 (MQ=255) |                                                         GTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGG  >  W3110S.gb/1247585‑1247641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑