Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	314251	314328	78	35 [0]	[0] 27	eaeH	attaching and effacing protein, pathogenesis factor

CTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAT  >  W3110S.gb/314189‑314250                                                              | ctcgcgcGATTATCTGAAACTGAGCGCCAATGGTTATATTCAGGCTTCTGGCTGGAAAAAAt  <  1:1334150/59‑1 (MQ=255) cTGGCGCGATTATCTGATACTGAGCGCCAACGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1493780/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:61736/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:355701/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:462973/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:475128/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:483172/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:494651/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:497664/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:532101/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:309866/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:645839/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:650762/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:690828/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:808183/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:882164/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:968193/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:973452/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1362176/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:100749/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1022882/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1024867/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1073559/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1172500/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1209990/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1225897/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1002310/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1424861/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1456411/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:153904/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:1560144/62‑1 (MQ=255) cTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:226989/62‑1 (MQ=255)  tGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:747877/61‑1 (MQ=255)  tGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:227979/61‑1 (MQ=255)                        gcgcCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAt  <  1:370427/39‑1 (MQ=255)                                                              | CTGGCGCGATTATCTGAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAAT  >  W3110S.gb/314189‑314250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑