Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1607495	1607678	184	81 [0]	[0] 96	lsrB	AI2 transporter

CGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCG  >  W3110S.gb/1607433‑1607494                                                              | cGCCCTGCGCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:31888/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAGAATGACAAAGTAGCGATTGTCg  <  1:985526/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:485033/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:687540/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:68185/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:657033/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:621544/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:54284/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:524738/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:51254/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:510155/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:489970/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:71050/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:466666/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:438422/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:404061/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:393365/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:377784/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:355003/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1106885/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1081220/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:87560/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1032935/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:97181/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:933076/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:917810/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:908942/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:899035/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:898214/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:895015/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:892461/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:332407/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:844705/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:779583/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:766895/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:761795/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:760758/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:758815/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:749310/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:745580/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1342305/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:312183/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1488614/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1466523/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1412983/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1386403/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:13651/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1356641/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1350047/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1347635/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1500449/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1324257/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1295986/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1258727/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1234615/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1185042/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:112286/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1122721/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1120062/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1508336/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1556544/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1559736/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:299338/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:290012/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:2560/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1567850/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:240492/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1599543/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:202905/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:160941/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1609485/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:162131/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1650447/62‑1 (MQ=255) cGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGGCg  <  1:1564946/62‑1 (MQ=255)             tGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1548616/50‑1 (MQ=255)              gCCGCACAAGCCGCAGAAAACTTGAAATATGACAAAGTAGCGATTGTCg  <  1:352476/49‑1 (MQ=255)                    caAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:772458/43‑1 (MQ=255)                       gCCGCAGAAAACTTGAAAAATGACTAAGTAGCGATTGTCg  <  1:1465325/40‑1 (MQ=255)                         cGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:1404513/38‑1 (MQ=255)                           cAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:491564/36‑1 (MQ=255)                            aGAAAACTTGAAAAATGACAAAGTAGCGATTGTCg  <  1:514192/35‑1 (MQ=255)                                                              | CGCCCTGCCCGCTGCCGCACAAGCCGCAGAAAACTTGAAAAATGACAAAGTAGCGATTGTCG  >  W3110S.gb/1607433‑1607494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑