Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2004698	2004779	82	94 [0]	[0] 21	fliC	flagellar filament structural protein

CTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAA  >  W3110S.gb/2004636‑2004697                                                              | cTTCTGTTTTGCCATCTTCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:675524/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCATTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1170070/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGACCTGGCGGCACCGGaa  <  1:1512140/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCTGaa  <  1:429290/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:533544/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:558716/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:431318/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:417705/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:398278/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:355177/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:308999/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:305513/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:274264/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:267189/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:258487/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:233516/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:207597/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:180855/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1640557/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1638090/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1631036/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:161551/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:158735/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1586209/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1559381/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:803252/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:972267/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:968531/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:965435/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:905567/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:905288/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:892182/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:891650/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:839090/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:830368/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:814173/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:552478/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:796861/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:764038/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:752260/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:735453/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:670628/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:629380/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:625379/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:585474/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:565663/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1542608/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1182619/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1031548/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1289845/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1275097/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1273928/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1271734/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1264545/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1255520/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1246078/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1231189/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1208187/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1204694/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1293747/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1162051/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1141877/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1125911/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1124072/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1082330/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1072380/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1067096/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1065435/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1063325/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1033812/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1431017/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1534857/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1531974/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1528292/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1517958/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:151739/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1498699/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1497847/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1463842/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1456102/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1446354/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1424394/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1411879/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1387836/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1365741/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1340856/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1317733/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1311732/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1310595/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1302649/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1295730/62‑1 (MQ=255) cTTCTGTTTTGCCATCATCTCAGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:71306/62‑1 (MQ=255) cTTCTGCTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:541226/62‑1 (MQ=255)  ttCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGaa  <  1:1167174/61‑1 (MQ=255)                                                              | CTTCTGTTTTGCCATCATCTCCGCCCAGTTTGACCGCGGTTGGAGAACTGGCGGCACCGGAA  >  W3110S.gb/2004636‑2004697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑