Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4176682	4176725	44	16 [0]	[0] 77	gspK	general secretory pathway component, cryptic

TGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAT  >  W3110S.gb/4176726‑4176786 |                                                              tGGTTAGCCAGCCTTCCCTCGGCCTTTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1583158/1‑62 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGAcc                      >  1:1087235/1‑41 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCg                    >  1:229663/1‑43 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCAt         >  1:1121314/1‑54 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCg      >  1:1246267/1‑57 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGa   >  1:311972/1‑60 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:499375/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:547247/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:456007/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:436922/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:409357/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:40458/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:330386/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:316591/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:254152/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:206384/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:205693/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:195767/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:193521/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:192657/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:186780/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1652048/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:843292/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:998012/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:987674/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:977122/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:972015/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:95104/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:921485/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:875666/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:864808/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:505339/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:784993/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:783264/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:757150/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:665756/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:616083/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:567752/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:560666/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1591411/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1176156/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1372931/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1355589/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1349082/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1258146/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:125331/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1235562/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1225537/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1177481/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1612065/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1172715/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1149304/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1138086/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:110955/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:108993/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1069571/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1042270/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1392378/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1649703/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1005915/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1572084/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1529476/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1524040/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1514039/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1510045/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1482971/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1482162/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:147851/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1473554/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1468277/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1441515/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1406088/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1401577/1‑61 (MQ=255) tGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1389699/1‑61 (MQ=255) tGGTTAGCCAGCCCTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1136361/1‑61 (MQ=255) tGGTTAGCCAGACTTCCCTCGGCC‑TTTTTTGCAAAAAGACCCGAGCGTCAGCATCCGTGAt  >  1:1037256/1‑61 (MQ=255) tGGTTAGCCAACCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAt  >  1:96922/1‑61 (MQ=255) |                                                              TGGTTAGCCAGCCTTCCCTCGGCC‑TTTTTTGCAATAAGACCCGAGCGTCAGCATCCGTGAT  >  W3110S.gb/4176726‑4176786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑