Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1274283	1274370	88	74 [0]	[0] 60	chaC	regulatory protein for cation transport

TGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTG  >  W3110S.gb/1274371‑1274431 |                                                             tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:651179/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:168677/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:234109/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:253721/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:280853/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:389418/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:4526/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:457554/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:495562/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:553518/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:584073/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:584467/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:603888/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:604027/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:611078/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1650663/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:668061/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:753233/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:754445/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:80536/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:833833/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:869811/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:870234/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:890480/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:895122/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:913831/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:916775/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:925935/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:946086/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:972742/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1351781/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1004076/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1011504/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1042043/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1042770/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1072124/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1089411/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1098332/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1130678/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1170646/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1232730/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1268061/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1281305/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1293603/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1339907/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1002602/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1391029/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1397713/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1416481/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1435175/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1442311/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1485033/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1496061/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1506924/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1512735/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1514529/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:151487/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1579195/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTg  <  1:1614733/61‑1 (MQ=255) tGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAAAAGAGACGCTg  <  1:1454505/61‑1 (MQ=255) |                                                             TGCACTGAAAGAGGGCGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTG  >  W3110S.gb/1274371‑1274431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑