Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1964275	1964516	242	33 [0]	[0] 80	[flhE]	[flhE]

GCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGA  >  W3110S.gb/1964517‑1964578 |                                                              gCTATCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1490952/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTcgcg                           >  1:878379/1‑37 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCTTAGAAAGAGGCGCAGACGACATCGa  >  1:475139/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCg   >  1:1141303/1‑61 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCg   >  1:276139/1‑61 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCg   >  1:740327/1‑61 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:412030/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:623461/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:603280/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:585773/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:570409/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:535246/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:470845/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:452896/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:717924/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:390676/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:370253/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:355324/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:314111/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:30365/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:220094/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1066606/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:804539/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:971070/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:970667/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:96643/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:929730/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:911194/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:888884/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:871259/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:858891/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:685404/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:802522/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:80181/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:790439/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:765702/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:75216/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:742804/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:719820/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:217057/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1282714/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1649385/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1419595/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1412418/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1402946/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1398782/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1394700/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1379474/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1326421/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1326238/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:144135/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1250388/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1244581/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1230410/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1193802/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1162941/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1143220/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1094756/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:107347/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1558079/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1645318/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1627895/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:162722/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1604133/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1596821/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1596471/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1593836/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1586560/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:156147/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1441595/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1553872/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1550500/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1543201/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1469059/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1465874/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:145504/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGa  >  1:1452523/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCACACGACATCGa  >  1:776119/1‑62 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGCCGCAGACGACATc    >  1:508455/1‑60 (MQ=255) gCTACCAGCGTCATCAATCCTGAAGCAGCTTGTCGCGTAGAAAGAGGCGCAGCCGACATCGa  >  1:816350/1‑62 (MQ=255) |                                                              GCTACCAGCGTCATCAATCCTGAAGCAGGTTGTCGCGTAGAAAGAGGCGCAGACGACATCGA  >  W3110S.gb/1964517‑1964578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑