Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2109049	2109180	132	71 [0]	[0] 97	wbbH	O‑antigen polymerase

AAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCAT  >  W3110S.gb/2109181‑2109242 |                                                              aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatatatat                 >  1:543819/1‑47 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCatat                     >  1:175408/1‑43 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTg              >  1:1042265/1‑50 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTGat  >  1:691779/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:637191/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:654109/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:619702/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:555622/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:547451/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:539917/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:533902/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:469129/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:447373/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:442499/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:440513/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:414017/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:406736/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:391730/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:363770/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:314332/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:265918/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:231201/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:207923/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:185144/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:780261/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:978666/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:969282/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:941152/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:936790/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:924374/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:904295/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:874145/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:849454/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:80564/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:793525/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:78401/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:647209/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:731865/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:730285/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:716417/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:697946/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:695754/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:67874/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:666670/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:665065/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:65425/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:205095/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1183250/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1301806/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:129370/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:174516/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1250086/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1240958/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1233404/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1222512/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1212707/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1209020/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1204033/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1191873/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1253662/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1169372/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1164424/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:112723/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1120248/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1119066/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1060234/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:105764/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1057344/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1054382/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1049619/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1326170/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:173448/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1613134/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1540750/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1514456/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:151346/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:147062/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1455351/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1439484/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:143515/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1396293/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1321799/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1332505/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1332646/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1361091/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1383655/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1392133/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1392498/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCat  >  1:1411211/1‑62 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:40043/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:853962/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:858265/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:1488872/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:1160265/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:483270/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCa   >  1:1169320/1‑61 (MQ=255) aaGTAGAAAAATCAACGTAGCCTCATTTAACTCAAAAGCatatat                   >  1:834836/1‑45 (MQ=255) |                                                              AAGTAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCAT  >  W3110S.gb/2109181‑2109242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑