| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2540846 | 29 (0.870) | 3 (0.100) | 3/88 | NT | 9.8% | coding (1335/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system |
| ? | W3110S.gb | = 2540852 | 30 (1.020) | coding (1341/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system | |||||
GACGAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2540772‑2540846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaaATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTTCA < W3110S.gb/2540852‑2540783 GACGAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCA < 1:2225878/70‑1 ACGAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAA < 1:2443882/70‑1 CGAGTCAATTGAAATCGGCGTAATGGTGGCAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCA > 1:2668671/1‑68 CGAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAG < 1:1608014/71‑1 GAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGA < 1:1056165/71‑1 GAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGA < 1:2680340/44‑1 ACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAA < 1:1379052/38‑1 CAACAATTGCACGTCATTTAGCCAAAGAAATCAACTTCT < 1:1224078/39‑1 AACAATTGCACGTCATTTAGCCAAAGAAATCAACTTCTTT > 1:2436438/1‑40 ATTGCACGTCATTTAGCCAAAGAAATCAACTTCTT < 1:2104757/35‑1 AAAGAAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGA > 1:661881/1‑71 AAGAAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCG < 1:1287866/69‑1 AAGAAATCAACTTCTTTGGCTAAATGACGTGCAATT > 1:2438230/1‑36 GAAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTT < 1:1599942/71‑1 AAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTTC < 1:2428941/71‑1 AAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTTC < 1:3089557/71‑1 AAATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTT > 1:2363317/1‑70 AATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCG > 1:13618/1‑65 AATCAACTTCTTTGGCTAAATGACGGGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTTCA < 1:366274/71‑1 GACGAGTCAATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2540772‑2540846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaaATCAACTTCTTTGGCTAAATGACGTGCAATTGTTGCGGCAGCCGGTGTTTCCACCATTACGCCGATTTCA < W3110S.gb/2540852‑2540783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |