| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2540846 | 29 (0.870) | 3 (0.100) | 3/88 | NT | 9.8% | coding (1335/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system |
| ? | W3110S.gb | = 2540852 | 30 (1.020) | coding (1341/1728 nt) | ptsI | PEP‑protein phosphotransferase of PTS system | |||||
AATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTAATGATA > W3110S.gb/2540780‑2540916 | aaTTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGtt > 1:195333/1‑70 (MQ=255) aTTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGa < 1:770684/71‑1 (MQ=255) ttGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGtt < 1:1489446/68‑1 (MQ=255) ttGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGAt < 1:2080042/71‑1 (MQ=255) tGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCCCGTCATTTAGCCAAAGAAGTTGATt < 1:366274‑M2/71‑2 (MQ=255) gAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATtt < 1:2428941‑M2/71‑3 (MQ=255) gAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATtt < 1:3089557‑M2/71‑3 (MQ=255) aaaTCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATttc < 1:1599942‑M2/71‑4 (MQ=255) aaaTCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATtt > 1:2363317‑M2/1‑68 (MQ=255) tCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATttcttt > 1:661881‑M2/1‑65 (MQ=255) cGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATttctt < 1:1287866‑M2/69‑6 (MQ=255) cGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATt > 1:13618‑M2/1‑64 (MQ=255) tAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATc < 1:2828956/71‑1 (MQ=255) aTGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCgg < 1:2990052/71‑1 (MQ=255) aTGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCgg > 1:259604/1‑71 (MQ=255) tggtggAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGc < 1:452394/71‑1 (MQ=255) cacCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTa < 1:2293939/57‑1 (MQ=255) ccGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTa > 1:392460/1‑52 (MQ=255) ccGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGAttt < 1:1135834/71‑1 (MQ=255) ccGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGAttt < 1:1109685/71‑1 (MQ=255) cGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGAttt > 1:1411248/1‑70 (MQ=255) gCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCaa < 1:126052/59‑1 (MQ=255) caacaaTTGCACGTCATTTAGCCAAAGAAatcaacttct < 1:1224078‑M1/39‑11 (MQ=255) caacaaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCgg > 1:1674750/1‑49 (MQ=255) aacaaTTGCACGTCATTTAGCCAAAGAAatcaacttcttt > 1:2436438‑M1/1‑28 (MQ=255) aacaaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTaca > 1:363788/1‑71 (MQ=255) aacaaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTaca > 1:3019571/1‑71 (MQ=255) aacaaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTaca > 1:2043248/1‑71 (MQ=255) caaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGt < 1:47091/41‑1 (MQ=255) aaTTGCACGTCATTTAGCCAAAGAAGTTGATttctt > 1:2438230‑M2/1‑31 (MQ=255) aaTTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAg < 1:2493892/64‑1 (MQ=255) aTTGCACGTCATTTAGCCAAAGAAatcaacttctt < 1:2104757‑M1/35‑12 (MQ=255) gCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTgg > 1:2105375/1‑70 (MQ=255) cACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCa < 1:2392115/71‑1 (MQ=255) aCGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAg < 1:2404811/71‑1 (MQ=255) tCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTaca < 1:691923/59‑1 (MQ=255) cATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACActct > 1:2471396/1‑62 (MQ=255) aTTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGAc > 1:1272425/1‑71 (MQ=255) aTTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGAc < 1:615900/71‑1 (MQ=255) ttAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCg > 1:1674312/1‑71 (MQ=255) aGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAg > 1:2631243/1‑49 (MQ=255) gCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTgg < 1:2764845/71‑1 (MQ=255) aaaGAAatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccga > 1:661881‑M1/1‑6 (MQ=255) aaaGAAGTTGATttctttggctaaatgacgtgcaattgtt > 1:2436438‑M2/1‑12 (MQ=255) aaaGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTaa > 1:2647687/1‑71 (MQ=255) aaaGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTaa > 1:1919250/1‑71 (MQ=255) aagaagTTGATttctttggctaaatgacgtgcaat < 1:2104757‑M2/35‑25 (MQ=255) aagaagTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTAat < 1:2317894/71‑1 (MQ=255) aaGAAatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccg < 1:1287866‑M1/69‑65 (MQ=255) aaGAAatcaacttctttggctaaatgacgtgcaatt > 1:2438230‑M1/1‑5 (MQ=255) agaagTTGATttctttggctaaatgacgtgcaattgttg < 1:1224078‑M2/39‑30 (MQ=255) agaagTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTAat > 1:1064592/1‑70 (MQ=255) gaagTTGATTTCTTTAGTATCGGCACCAATGATTTaa > 1:2713469/1‑37 (MQ=255) gAAatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccgattt < 1:1599942‑M1/71‑69 (MQ=255) aaatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccgatttc < 1:3089557‑M1/71‑70 (MQ=255) aaatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccgatttc < 1:2428941‑M1/71‑70 (MQ=255) aaatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccgattt > 1:2363317‑M1/1‑2 (MQ=255) agTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCa > 1:882595/1‑39 (MQ=255) agTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTAatgata < 1:2369870/71‑1 (MQ=255) aatcaacttctttggctaaatgacgtgcaattgttgcggcagccggtgtttccaccattacgccg > 1:13618‑M1/1‑1 (MQ=255) aatcaacttctttggctaaatgacgggcaattgttgcggcagccggtgtttccaccattacgccgatttca < 1:366274‑M1/71‑71 (MQ=255) | AATTGAAATCGGCGTAATGGTGGAAACACCGGCTGCCGCAACAATTGCACGTCATTTAGCCAAAGAAGTTGATTTCTTTAGTATCGGCACCAATGATTTAACGCAGTACACTCTGGCAGTTGACCGTGGTAATGATA > W3110S.gb/2540780‑2540916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |