New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2782231	42 (1.260)	3 (0.090)	3/96	NT	7.2%	intergenic (‑367/+63)	pinH/ypjB	ECK2645:JW5423:b2648; predicted invertase fragment/hypothetical protein
	?	W3110S.gb	= 2782248	37 (1.150)					intergenic (‑384/+46)	pinH/ypjB	ECK2645:JW5423:b2648; predicted invertase fragment/hypothetical protein

AACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2782161‑2782231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTTAGTGTCACTACCA  <  W3110S.gb/2782248‑2782180                                                                                                                                              AACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAA                                                                       <  1:1796150/71‑1                        AGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAAACAATATGTATTATT                                                        >  1:2062165/1‑63                                    ATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAAACAATATGTATTATTGA                                                      <  1:727581/53‑1                                                      ATAATCCCGTTTACTCAATCAATAATACATATTGTTTGAGTAAACGGGATTATTCTTCACACTACATCCAT                  >  1:1948355/1‑71                                                                      AAACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTTAGTGTCACTACCA  <  1:810100/71‑1                                                                      AAACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTTAGTGTCACTACC   <  1:2499106/70‑1                                                                       AACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTTAGT            >  1:1227167/1‑60                                                                       AACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTAAGT            >  1:2688755/1‑60                                                                                                                                              AACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2782161‑2782231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaACAATATGTATTATTGATTGAGTAAACGGGATTATTCTTCACACTACATCCATTTTAGTGTCACTACCA  <  W3110S.gb/2782248‑2782180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.