| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2782231 | 42 (1.260) | 3 (0.090) | 3/96 | NT | 7.2% | intergenic (‑367/+63) | pinH/ypjB | ECK2645:JW5423:b2648; predicted invertase fragment/hypothetical protein |
| ? | W3110S.gb | = 2782248 | 37 (1.150) | intergenic (‑384/+46) | pinH/ypjB | ECK2645:JW5423:b2648; predicted invertase fragment/hypothetical protein | |||||
AACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGA > W3110S.gb/2782161‑2782300 | aaCGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAA < 1:1796150‑M1/71‑1 (MQ=255) aCGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACtcaat > 1:3162931/1‑71 (MQ=255) gCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTcaatcaat > 1:2552419/1‑70 (MQ=255) ccTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAataata > 1:2061628/1‑71 (MQ=255) cTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAataata > 1:1934797/1‑70 (MQ=255) ttttCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACtcaatcaa > 1:434490/1‑63 (MQ=255) ttttCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACa > 1:1778778/1‑70 (MQ=255) ttttCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACa > 1:662793/1‑70 (MQ=255) ttttCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACa > 1:956101/1‑70 (MQ=255) tGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTg < 1:1142129/68‑1 (MQ=255) tGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTtt < 1:810100‑M2/71‑3 (MQ=255) ggTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTtt < 1:2499106‑M2/70‑3 (MQ=255) gTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCa < 1:786372/71‑1 (MQ=255) gTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCa < 1:1558368/71‑1 (MQ=255) aGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAAacaatatgtattatt > 1:2062165‑M1/1‑48 (MQ=255) gTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATc > 1:730497/1‑71 (MQ=255) gTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATc < 1:180103/71‑1 (MQ=255) tGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCa < 1:1365188/67‑1 (MQ=255) cacTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCaataa > 1:246006/1‑50 (MQ=255) acTTAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTt > 1:2688755‑M2/1‑59 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCaataat < 1:414519/50‑1 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCaataat < 1:2327064/50‑1 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGt > 1:3073330/1‑59 (MQ=255) acTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTt > 1:1227167‑M2/1‑59 (MQ=255) cTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACtcaatcaa < 1:801125/45‑1 (MQ=255) cTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGtt < 1:2020906/71‑1 (MQ=255) tAAAATTGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTc > 1:1418168/1‑60 (MQ=255) aaaTGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGttat > 1:2597061/1‑70 (MQ=255) aaaTGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGttat > 1:3100923/1‑70 (MQ=255) aTGGATGTAGTGTGAAGAATAATCCCGTTTACTCAAacaatatgtattattga < 1:727581‑M1/53‑18 (MQ=255) aTGGATGTAGTGTGAAGAATAATCCCGTTTACTCAAACAATATGTATTATTGAttgagtaaacgggattat > 1:1948355‑M2/1‑53 (MQ=255) ggATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGttat > 1:1994771/1‑66 (MQ=255) ggATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTAtct > 1:1128583/1‑71 (MQ=255) gATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTAtct < 1:794129/70‑1 (MQ=255) gtgtGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGt > 1:1133750/1‑70 (MQ=255) gtgtGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGt > 1:148495/1‑70 (MQ=255) tgAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTc < 1:2647744/44‑1 (MQ=255) tgAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTaaa < 1:911636/70‑1 (MQ=255) tgAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTaaa > 1:3154935/1‑70 (MQ=255) tgAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTaa < 1:2307174/69‑1 (MQ=255) aagaaTAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAAt > 1:35887/1‑71 (MQ=255) agaaTAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAAtt > 1:1033335/1‑71 (MQ=255) aataatCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGc > 1:1333199/1‑71 (MQ=255) ataatCCCGTTTACTCAAtcaataatacatattgtttgagtaaacgggattattcttcacactacatccat > 1:1948355‑M1/1‑18 (MQ=255) atCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGt > 1:338326/1‑44 (MQ=255) atCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCAtt < 1:2539481/71‑1 (MQ=255) atCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCAt < 1:1504248/70‑1 (MQ=255) tttACTCAATCAATAATACATATTGTTTCAATCTACGttatt < 1:1338381/42‑1 (MQ=255) tttACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATttatt < 1:2497481/69‑1 (MQ=255) ttACTCAATCTATAATTCATATTGTTTCAATCTACGttat < 1:1560550/40‑1 (MQ=255) ttACTCAATCAATAATACATATTGTTTCAATCTACGTtattat > 1:2699257/1‑43 (MQ=255) tACTCAATCAATAATACATATTGTTTCAATCTACGTtattat < 1:1507846/42‑1 (MQ=255) tACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAAt > 1:2559061/1‑70 (MQ=255) aCTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTaaaaa < 1:3057562/54‑1 (MQ=255) aCTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATc < 1:1268038/70‑1 (MQ=255) cTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCTATTTATTAATCa < 1:1002756/70‑1 (MQ=255) aatcaatAATACATATTGTTTCAATCTACGttatt > 1:2377595/1‑35 (MQ=255) aatcaatAATACATATTGTTTCAATCTACGttatt > 1:2373889/1‑35 (MQ=255) aatcaatAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTaaaaa < 1:1402537/50‑1 (MQ=255) aatcaatAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTg > 1:312419/1‑70 (MQ=255) aaacaatatgtattattgattgagtaaacgggattattcttcacactacatccattttagtgtcactacca < 1:810100‑M1/71‑70 (MQ=255) aaacaatatgtattattgattgagtaaacgggattattcttcacactacatccattttagtgtcactacc < 1:2499106‑M1/70‑69 (MQ=255) aacaatatgtattattgattgagtaaacgggattattcttcacactacatccattttagt > 1:1227167‑M1/1‑1 (MQ=255) aacaatatgtattattgattgagtaaacgggattattcttcacactacatccatttaagt > 1:2688755‑M1/1‑1 (MQ=255) | AACGTAGCCCCTTTTTCTTTGGTAGTGACACTAAAATGGATGTAGTGTGAAGAATAATCCCGTTTACTCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGA > W3110S.gb/2782161‑2782300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |