| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3748799 = | 2 (0.060) | 34 (1.020) | 26/100 | NT | 94.4% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748866‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > W3110S.gb/4056222‑4056287 TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG > 1:2162203/1‑70 TCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTA < 1:3116508/70‑1 GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:1466351/68‑1 TTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT > 1:1668923/1‑71 TTATCCTTATCATT‑CCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:2747322/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:580090/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACT > 1:1476517/1‑63 ATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTAT > 1:984676/1‑71 CCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT < 1:1095323/66‑1 TATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCCACTTATTGA > 1:763746/1‑69 ATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:2878128/52‑1 TCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:2880842/1‑71 TGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTT > 1:1982376/1‑71 CTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTAT < 1:2246087/71‑1 TGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAAATTATTGATAGTGTTTTATt > 1:2151079/1‑70 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGT > 1:1728446/1‑71 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGAC > 1:2902692/1‑44 GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGAC > 1:2213223/1‑44 TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA > 1:2114279/1‑66 TTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT > 1:2580075/1‑69 TCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT > 1:3151342/1‑67 AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT < 1:27779/70‑1 ATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC > 1:2787247/1‑40 ttCTTCATTCCGGGTTATTGTTATTAGGGTAATTACTCCAACTTATTGATAGTGTTT < 1:2795552/55‑1 ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATT > 1:648239/1‑41 ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT > 1:3096370/1‑37 CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA > 1:1482346/1‑71 GTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGA > 1:446113/1‑64 TATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG < 1:1347522/51‑1 ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTAT > 1:1302643/1‑44 ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA > 1:648044/1‑43 TTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT > 1:2933123/1‑51 TTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA < 1:2302943/50‑1 TATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:2855789/1‑69 TATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:1835916/1‑69 TATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:1005743/1‑69 ATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT < 1:2817983/46‑1 ATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA < 1:2013798/37‑1 TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG < 1:1529592/70‑1 GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAT < 1:133125/52‑1 TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748866‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > W3110S.gb/4056222‑4056287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |