New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3748799 =	2 (0.060)	34 (1.020)	26/100	NT	94.4%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

TAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG  >  W3110S.gb/4056155‑4056284                                                                    |                                                               tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                              >  1:2831328/1‑70 (MQ=255) tAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                              <  1:2108152/70‑1 (MQ=255)         cTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGAc                                                        <  1:1235694/68‑1 (MQ=255)         cTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTcc                                                     <  1:346804/71‑1 (MQ=255)               atatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTa                                               >  1:2178930/1‑71 (MQ=255)                tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCgg                                                               <  1:101544/54‑1 (MQ=255)                tatTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAt                                              >  1:2978810/1‑71 (MQ=255)                    ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                           <  1:2072117/70‑1 (MQ=255)                    ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                           <  1:2153278/70‑1 (MQ=255)                     tCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTAtt                                             <  1:958562/67‑1 (MQ=255)                       tgtgCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                              <  1:2187966/48‑1 (MQ=255)                           ccAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGttt                                   >  1:440847/1‑71 (MQ=255)                             aaTATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                           <  1:2370324/61‑1 (MQ=255)                               tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATg                               <  1:258346/71‑1 (MQ=255)                                 ttatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                          >  1:1159064/1‑58 (MQ=255)                                  tatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                             <  1:1298211/70‑1 (MQ=255)                                       ctAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                        >  1:2292207/1‑70 (MQ=255)                                        tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                             >  1:1406663/1‑64 (MQ=255)                                        tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                        <  1:2216011/69‑1 (MQ=255)                                        tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                        <  1:791440/69‑1 (MQ=255)                                         aaTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTc                                                      <  1:2118342/38‑1 (MQ=255)                                              cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACt                                                 <  1:1781423/38‑1 (MQ=255)                                              cAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                 <  1:1831834/70‑1 (MQ=255)                                                   aaGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc           >  1:169816/1‑71 (MQ=255)                                                      ttACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGtttt                                  <  1:292223/45‑1 (MQ=255)                                                       tACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                        <  1:2934909/54‑1 (MQ=255)                                                        aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt      >  1:2069521/1‑71 (MQ=255)                                                          ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                           <  1:47874/48‑1 (MQ=255)                                                          ttttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                        <  1:1845212/51‑1 (MQ=255)                                                            ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa                       >  1:2703433/1‑50 (MQ=40)                                                            ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt   <  1:1663878/70‑1 (MQ=37)                                                            ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg  >  1:2352394/1‑71 (MQ=35)                                                            ttAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg  >  1:875789/1‑71 (MQ=35)                                                             tAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg  <  1:2699863/70‑1 (MQ=35)                                                                    |                                                               TAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG  >  W3110S.gb/4056155‑4056284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.