New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3986482 =	25 (0.750)	3 (0.100)	3/90	NT	11.0%	intergenic (‑26/‑737)	slp/insH	outer membrane lipoprotein/IS5 transposase and trans‑activator
	?	W3110S.gb	3986513 =	26 (0.870)					intergenic (‑57/‑706)	slp/insH	outer membrane lipoprotein/IS5 transposase and trans‑activator

AGGTTTACGTTACTATCAGGCATATCACCTCAGAATCAGATGAAAACTATAAAGAAATATCTATTATGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3986554‑3986482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT  >  W3110S.gb/3986513‑3986579                                                                                                                                              AGGTTTACGTTACTATCAGGCATATCACCTCAGAATCAGATGAAAACTATAAAGAAATATCTATTATGGTT                                                                       >  1:781971/1‑71    TTTACGTTACTATCAGGCATATCACCTCAGAATCAGATGAAAACTATAAAGAAATATCTATTATGGTTTT                                                                     <  1:1022888/70‑1                                              ACTATAAAGAAATATCTATTATGGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAA                                    >  1:1201113/1‑61                                               CTATAAAGAAATATCTATTATGGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCT                           >  1:610532/1‑69                                                       AAATATCTATTATGGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTA                                     <  1:423658/51‑1                                                                     GTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGT   <  1:323289/71‑1                                                                      TTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTT                <  1:847917/57‑1                                                                       TTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT  <  1:2051465/70‑1                                                                       TTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT  >  1:2842018/1‑70                                                                        TTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCT     >  1:925109/1‑66                                                                         TCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCT                       >  1:2218283/1‑47                                                                                                                                              AGGTTTACGTTACTATCAGGCATATCACCTCAGAATCAGATGAAAACTATAAAGAAATATCTATTATGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3986554‑3986482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT  >  W3110S.gb/3986513‑3986579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.