| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3986482 = | 25 (0.750) | 3 (0.100) | 3/90 | NT | 11.0% | intergenic (‑26/‑737) | slp/insH | outer membrane lipoprotein/IS5 transposase and trans‑activator |
| ? | W3110S.gb | 3986513 = | 26 (0.870) | intergenic (‑57/‑706) | slp/insH | outer membrane lipoprotein/IS5 transposase and trans‑activator | |||||
GTCATGTTCATGTTACTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT > W3110S.gb/3986446‑3986579 | gTCATGTTCATGTTACTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCAt < 1:86542/70‑1 (MQ=255) tcatgttcatgtTACTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCt < 1:252718/71‑1 (MQ=255) atgttACTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCt > 1:743361/1‑69 (MQ=255) cTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:116087/70‑1 (MQ=255) cTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1524316/70‑1 (MQ=255) aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGAtt > 1:1121803/1‑59 (MQ=255) tCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTg < 1:1830890/61‑1 (MQ=255) aTCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCt > 1:352255/1‑49 (MQ=255) aTCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTg > 1:2972872/1‑70 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAg > 1:309303/1‑51 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAAc > 1:1514970/1‑71 (MQ=255) tatTAAAACCATAATAGGTATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACg > 1:2185106/1‑70 (MQ=255) ttAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1936100/51‑1 (MQ=255) ttAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTa < 1:1928991/70‑1 (MQ=255) AAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTaaa < 1:1022888‑M1/70‑1 (MQ=255) AACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCt > 1:781971‑M1/1‑71 (MQ=255) actataaagaaatatctattatggttttCATCTGATTCTGAGGTGATATGCCTGATAGTaa > 1:1201113‑M2/29‑61 (MQ=255) ctataaagaaatatctattatggttttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCt > 1:610532‑M2/28‑69 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGcc > 1:1998841/1‑49 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGcc > 1:2383388/1‑49 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGcc > 1:2437949/1‑49 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCt < 1:2895617/71‑1 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCt < 1:2830706/71‑1 (MQ=255) taataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTg < 1:2548340/71‑1 (MQ=255) aataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTaaa > 1:178329/1‑62 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTaa < 1:3135514/60‑1 (MQ=255) taGATTTTTCTTTATAGTTTTCATCTGATTCTGAGGt > 1:2920759/1‑37 (MQ=255) taGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGa < 1:1838322/48‑1 (MQ=255) aGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGt > 1:1213623/1‑71 (MQ=255) aaatatctattatggttttCATCTGATTCTGAGGTGATATGCCTGATAGTa < 1:423658‑M2/32‑1 (MQ=255) tttCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGa < 1:110421/63‑1 (MQ=255) ttCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTaa < 1:1127787/52‑1 (MQ=255) ttCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCt > 1:2269466/1‑56 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGt > 1:1089710/1‑44 (MQ=255) tataGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCttt > 1:2665537/1‑71 (MQ=255) gttttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGt < 1:323289‑M2/66‑1 (MQ=255) ttttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGttt < 1:847917‑M2/53‑1 (MQ=255) tttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGtt > 1:2842018‑M2/4‑70 (MQ=255) tttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGtt < 1:2051465‑M2/67‑1 (MQ=255) ttCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCt > 1:925109‑M2/3‑66 (MQ=255) tCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCt > 1:2218283‑M2/2‑47 (MQ=255) | GTCATGTTCATGTTACTATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTT > W3110S.gb/3986446‑3986579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |