| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 7 (0.210) | 6 (0.270) | 6/68 | NT | 52.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 6 (0.270) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAT > W3110S.gb/1209312‑1209448 | ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:1624097‑M1/56‑71 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc > 1:1152008‑M1/1‑70 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg > 1:1626801‑M1/53‑70 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc > 1:1591090/1‑70 (MQ=255) aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:3024171‑M1/23‑1 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:96585‑M1/70‑9 (MQ=255) ggaatgatgccatttgcttgttatttcttcattttgataaacgTTGGTTTGGGAGAAGGa < 1:3019049‑M1/17‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:2491339‑M1/41‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:63923/1‑70 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:1061741/1‑70 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:930323‑M1/71‑20 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc < 1:423790‑M1/71‑24 (MQ=255) tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:2661314‑M1/32‑52 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:2428790‑M1/40‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:2392351‑M1/18‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1922815‑M1/23‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:1977747‑M1/29‑70 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:3130273‑M1/28‑69 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg > 1:2517711‑M1/1‑40 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa > 1:585335‑M1/24‑70 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:2362996‑M1/36‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:1009738‑M1/38‑2 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGa > 1:2834667/1‑71 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa < 1:1648427‑M1/23‑1 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:843920‑M1/20‑1 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc < 1:1026820‑M1/71‑40 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:2948277‑M1/61‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:2944846‑M1/61‑1 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:3087853/1‑71 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt < 1:846038‑M1/40‑16 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:902404/42‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:1024949/56‑1 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa > 1:1823169/1‑58 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:1430855‑M1/7‑36 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:545636‑M1/7‑36 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:449929‑M1/7‑54 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca > 1:1465364‑M1/1‑21 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcctt < 1:1101666‑M1/59‑39 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcctt < 1:378107‑M1/59‑39 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:2609225‑M1/67‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:2854532‑M1/71‑52 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:220015‑M1/71‑52 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 1:604016‑M1/1‑20 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 1:1205026‑M1/49‑34 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata < 1:225107‑M1/71‑1 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacagg > 1:1744444‑M1/1‑14 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc > 1:3146596‑M1/1‑14 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:2037913‑M1/40‑1 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:2792405‑M1/40‑1 (MQ=255) TTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt < 1:2423809‑M1/63‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:2159520‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:59551‑M1/70‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:2450724‑M1/1‑70 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:2087563‑M1/1‑71 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 1:1350974‑M1/1‑71 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa > 1:3122416‑M1/1‑71 (MQ=255) AGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa > 1:2974534‑M1/1‑71 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:2478686‑M1/1‑71 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 1:2214496‑M1/1‑71 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt < 1:2247611‑M1/71‑1 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt < 1:2562762‑M1/71‑1 (MQ=255) AAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:798900‑M1/1‑51 (MQ=255) | AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAT > W3110S.gb/1209312‑1209448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |