| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 7 (0.210) | 6 (0.270) | 6/68 | NT | 52.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 6 (0.270) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
GCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211110‑1211249 | gCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 1:776014/70‑1 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc > 1:1744444‑M2/1‑57 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt < 1:2854532‑M2/71‑21 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt < 1:220015‑M2/71‑21 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg > 1:526707/1‑68 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt > 1:1465364‑M2/1‑40 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt < 1:1026820‑M2/71‑33 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc > 1:3146596‑M2/1‑39 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:876829/1‑69 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt < 1:1101666‑M2/59‑22 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt < 1:378107‑M2/59‑22 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:985745/1‑37 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa < 1:1205026‑M2/49‑17 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtt > 1:604016‑M2/1‑32 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacag > 1:2517711‑M2/1‑31 (MQ=255) gAACCGGGACTCCAACAGGTAATGCAGAGCATTCTCCCAAACCAACg < 1:2863972/47‑1 (MQ=39) gAACCGGGACACCAACAGGTAAAGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc > 1:1435331/1‑69 (MQ=255) ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc < 1:423790‑M2/71‑49 (MQ=255) ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa < 1:56990/70‑1 (MQ=255) ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAt > 1:3134058/1‑71 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:930323‑M2/71‑53 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc > 1:614839/1‑56 (MQ=255) aCAGGTAATGCAGAGccttctcccaaaccaaggttttcga < 1:846038‑M2/40‑26 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:393450/71‑1 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc < 1:96585‑M2/70‑63 (MQ=255) agCCTTCTCCCAAACCAACGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:1972635/71‑1 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat > 1:1152008‑M2/1‑1 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgca < 1:1009738‑M2/38‑38 (MQ=255) | GCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA > W3110S.gb/1211110‑1211249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |