| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2109295 = | 40 (0.710) | 4 (0.080) | 3/90 | NT | 9.4% | coding (69/1167 nt) | wbbH | O‑antigen polymerase |
| ? | W3110S.gb | 2109315 = | 42 (0.850) | coding (49/1167 nt) | wbbH | O‑antigen polymerase | |||||
ATTAATGATCTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2109367‑2109295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatataAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATT > W3110S.gb/2109315‑2109383 ATTAATGATCTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATA > 1:3664604/1‑71 TTAATGATCTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATAT < 1:2506331/71‑1 TAATGATCTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATATA > 1:4653668/1‑71 CTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATATA < 1:306850/64‑1 CTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATA > 1:4267201/1‑62 AGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAT < 1:4172186/70‑1 TTATATCTTAAGAAGGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAAT < 1:2436248/55‑1 ATCTTAAGAAGTATATAAACAGATAAATGCTGTAAT < 1:11928/36‑1 ATCTTAAGAAGGATATAAACAGATAAATGCTGTAAT < 1:1868489/36‑1 ATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAG < 1:671615/49‑1 ATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATA > 1:4421315/1‑46 TAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATT > 1:1051049/1‑71 TAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATA < 1:1213527/69‑1 AAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGA > 1:4971064/1‑42 ATTAATGATCTATCTTGTAATTAGTGTCTTTCTCATTACAGCATTTATCTGTTTATATCTTAAGAAGGATATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2109367‑2109295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatataAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATT > W3110S.gb/2109315‑2109383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |