| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2109295 = | 40 (0.710) | 4 (0.080) | 3/90 | NT | 9.4% | coding (69/1167 nt) | wbbH | O‑antigen polymerase |
| ? | W3110S.gb | 2109315 = | 42 (0.850) | coding (49/1167 nt) | wbbH | O‑antigen polymerase | |||||
ATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTA > W3110S.gb/2109226‑2109365 | atCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAata > 1:3142915/1‑71 (MQ=255)atCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAat < 1:3908938/70‑1 (MQ=255)aatataatgagtacggattaatgatctatcttgtaattagtgtctttctcattacagcatttatctgttta > 1:1051049‑M1/70‑71 (MQ=255) tataatgagtacggattaatgatctatcttgtaattagtgtctttctcattacagcatttatctgttta < 1:1213527‑M1/2‑1 (MQ=255) tttCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAata > 1:4233787/1‑60 (MQ=255) tttCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTa < 1:3579691/71‑1 (MQ=255) tCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCcttctt > 1:2723679/1‑68 (MQ=255) tCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGAtata < 1:4238674/71‑1 (MQ=255) cAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAAc < 1:2418971/71‑1 (MQ=255) aaTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAatata > 1:3985273/1‑51 (MQ=255) aTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAatat < 1:420066/49‑1 (MQ=255) aTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:3617274/1‑68 (MQ=255) aTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAg < 1:2720310/71‑1 (MQ=255) ctatcttgtaattagtgtctttctcattacagcatttatctgttTatat < 1:671615‑M1/5‑1 (MQ=255) aaGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGa > 1:540732/1‑70 (MQ=255) tatcttgtaattagtgtctttctcattacagcatttatctgtttat > 1:4421315‑M1/44‑46 (MQ=255) aGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATa < 1:2199917/71‑1 (MQ=255) gACCAGTGCGAAGATGATATTAACGCATAAGGCTGGATAAAATATATCCTTCTTAAGATATaa < 1:250592/63‑1 (MQ=255) tcttgtaattagtgtctttctcattacagcatttatctgttt > 1:4971064‑M1/42‑42 (MQ=255) aCCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATaaa < 1:4413216/71‑1 (MQ=255) gTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCt > 1:5149212/1‑71 (MQ=255) tGCGAAGATGATATTAACGCATACGGCTGGATAAAatata < 1:1536421/40‑1 (MQ=255) attagtgtctttctcattacagcatttatctgttTATATCCTTCTTAAGATATaa < 1:2436248‑M1/21‑1 (MQ=255) aaGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt < 1:2929565/71‑1 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:4878007/1‑53 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTaa > 1:4958494/1‑69 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:3841251/1‑70 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:1561209/1‑70 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:4394183/1‑70 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGat > 1:1963393/1‑45 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGat > 1:3009417/1‑45 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgaga < 1:2973464/71‑1 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgag > 1:2412919/1‑70 (MQ=255) gatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAAc > 1:2012209/1‑50 (MQ=255) tatTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgag > 1:3557520/1‑67 (MQ=255) tatTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAg < 1:2566342/71‑1 (MQ=255) atTAACGCATACGGCTGGATAAAATATATCcttctt < 1:3074934/36‑1 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:4582828/1‑45 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa < 1:3855587/70‑1 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa > 1:4339163/1‑70 (MQ=255) aCGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACt < 1:3004491/71‑1 (MQ=255) attacagcatttatctgttTATATCTTAAGAAGGATATAAACAGATAAATGCTGTAATGAGAAAGACACt < 1:4172186‑M1/51‑1 (MQ=255) attacagcatttatctgttTATATCCTTCTTAAGat < 1:1868489‑M1/17‑1 (MQ=255) attacagcatttatctgttTATATACTTCTTAAGat < 1:11928‑M1/17‑1 (MQ=255) gCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGa > 1:5151712/1‑44 (MQ=255) aTACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa < 1:2490106/63‑1 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:3647772/1‑35 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:361447/70‑1 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4514452/70‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:3568055/71‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:2555154/71‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:1892866/71‑1 (MQ=255) cTGGATAAAATATATCCTTCTTAAGATATAAACAGAt < 1:310234/37‑1 (MQ=255) tGGATAAAATATATCCTTCTTAAGATATAAACAGATa < 1:799697/37‑1 (MQ=255) ggATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4912149/65‑1 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4393505/62‑1 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAaga > 1:3830383/1‑66 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAaga > 1:1550565/1‑66 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4860218/59‑1 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:2911979/59‑1 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt > 1:4740725/1‑71 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt < 1:1030301/71‑1 (MQ=255) atatatCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGaaa > 1:1708156/1‑46 (MQ=255) atatatCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt > 1:3954474/1‑70 (MQ=255) TATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagatag < 1:306850‑M1/64‑1 (MQ=255) TATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTa > 1:4653668‑M1/1‑71 (MQ=255) | ATCTGACGTTATTTCATATCCCAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTA > W3110S.gb/2109226‑2109365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |