| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 57 (1.010) | 12 (0.290) +AGGGTCCCTAAGTC |
10/74 | NT | 27.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 29 (0.520) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71198‑71335 | ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg < 1:4216125‑M1/71‑4 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:936753/1‑70 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:4984683/1‑70 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAAAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:917910/1‑70 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:4258891‑M1/71‑9 (MQ=255) ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:18226‑M1/1‑63 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:1434519/1‑70 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc > 1:4867691‑M1/1‑62 (MQ=255) gagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:757037‑M1/70‑10 (MQ=255) agcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGaa < 1:1767448/71‑1 (MQ=255) agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:4336174‑M1/71‑12 (MQ=255) gcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt < 1:3657668/71‑1 (MQ=255) gcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:429386/1‑71 (MQ=255) gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaag > 1:4179690‑M1/1‑59 (MQ=255) cgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt < 1:3757941/70‑1 (MQ=255) gagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATc > 1:983861/1‑70 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa > 1:3986531/1‑70 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:1208312/71‑1 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:3586559‑M1/68‑18 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:2827700‑M1/68‑18 (MQ=255) ttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc > 1:1634689/1‑70 (MQ=255) ttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:1562555/70‑1 (MQ=255) tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:1273153/1‑71 (MQ=255) tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:2670951/1‑71 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaa < 1:3990385‑M1/69‑19 (MQ=255) cGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa < 1:2133506/70‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTg > 1:639817/1‑53 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc < 1:1913063/58‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:4701237/71‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAtt < 1:1571118/71‑1 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAAt > 1:1392974/1‑70 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt > 1:3474414/1‑52 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGAc > 1:927398/1‑71 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGc > 1:3481518/1‑71 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:3599879/43‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:3968330/70‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:1494023/1‑70 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa > 1:4177607‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:1737745‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa > 1:2202136/1‑54 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa < 1:2956345/51‑1 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGa > 1:428749/1‑60 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:104849/1‑70 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt > 1:5005628/1‑41 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATc > 1:3553565/1‑49 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:1803212/1‑69 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:4431545/1‑70 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa > 1:1661041/1‑49 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:2148640/1‑52 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg > 1:5189505/1‑69 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg < 1:2599817/71‑1 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg < 1:742472/66‑1 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGa < 1:4767152/39‑1 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:4639143‑M1/62‑35 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:3233552‑M1/1‑28 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:1972296‑M1/1‑27 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATa < 1:1675726/70‑1 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc < 1:5026740‑M1/70‑46 (MQ=255) atgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGt < 1:4334218/70‑1 (MQ=255) tgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGttt < 1:4253289/71‑1 (MQ=255) tgTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGttt > 1:1408042/1‑71 (MQ=255) gTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa > 1:3146542/1‑35 (MQ=255) gTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa > 1:1786896/1‑35 (MQ=255) tAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:500131/1‑70 (MQ=255) aGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg > 1:4241414/1‑69 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:1420443/71‑1 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:3516998/71‑1 (MQ=255) ccGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg < 1:5109307/53‑1 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGt < 1:988369/63‑1 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:3270900/69‑1 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGa < 1:3259388/37‑1 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg < 1:4377887/64‑1 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAAt > 1:5085086/1‑69 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt < 1:1473509‑M1/71‑60 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:2339707‑M1/50‑39 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGCCGGCTTGACGGAGTAGCAt > 1:4536192/1‑54 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc < 1:1776306/70‑1 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc < 1:809656/70‑1 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:1397650‑M1/1‑10 (MQ=255) gTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACgg < 1:761907/44‑1 (MQ=255) tGTCATAAcgggtccctaagtctaaaacgaaaggcccagtctt < 1:1044363‑M1/43‑36 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:4208595‑M1/43‑36 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:2699583‑M1/43‑36 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:4834008‑M1/1‑8 (MQ=255) gTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:1076883‑M1/44‑38 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCtt > 1:68867/1‑71 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCt < 1:3374443/70‑1 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCt < 1:3679498/70‑1 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc > 1:2507504/1‑62 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTg < 1:4897702/53‑1 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc < 1:2119083/71‑1 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTa > 1:2807355/1‑39 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTa > 1:619248/1‑39 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa > 1:1160053/1‑71 (MQ=255) | CCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71198‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |