| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 57 (1.010) | 12 (0.290) +AGGGTCCCTAAGTC |
10/74 | NT | 27.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 29 (0.520) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > W3110S.gb/3464811‑3464948 | ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:3586559‑M2/3‑1 (MQ=255)ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa < 1:2827700‑M2/3‑1 (MQ=255) ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa < 1:3990385‑M2/4‑1 (MQ=255) aagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaa > 1:4177607‑M2/53‑55 (MQ=255) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:1173998/1‑71 (MQ=34) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:61342/71‑1 (MQ=34) ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 1:419962/71‑1 (MQ=34) gcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:14603/1‑71 (MQ=34) cggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt > 1:2090928/1‑71 (MQ=34) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:3233552‑M2/43‑50 (MQ=255) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:4639143‑M2/20‑1 (MQ=255) gATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4396801/71‑1 (MQ=34) aatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:1972296‑M2/42‑71 (MQ=255) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:3451507/1‑71 (MQ=34) ttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:3375852/1‑61 (MQ=31) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGc < 1:5026740‑M2/31‑1 (MQ=255) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc < 1:1778427/70‑1 (MQ=35) gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt > 1:3057719/1‑71 (MQ=34) gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:2880601/70‑1 (MQ=35) cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg < 1:4952259/71‑1 (MQ=34) cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCg > 1:4568123/1‑71 (MQ=34) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt < 1:4394030/70‑1 (MQ=35) tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc > 1:3712185/1‑53 (MQ=33) tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:2683248/53‑1 (MQ=33) tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:2677508/53‑1 (MQ=33) tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg < 1:1318906/60‑1 (MQ=35) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCttt > 1:3884992/1‑50 (MQ=32) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:3153025/1‑71 (MQ=34) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg < 1:2339707‑M2/24‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt < 1:1473509‑M2/45‑1 (MQ=255) agagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:1702823/54‑1 (MQ=35) gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:1397650‑M2/25‑50 (MQ=255) gagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:4389027/53‑1 (MQ=35) tgtcataacgggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:1044363‑M2/21‑1 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:4834008‑M2/23‑38 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:4208595‑M2/21‑1 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt < 1:2699583‑M2/21‑1 (MQ=255) gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:5076299/1‑58 (MQ=35) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:1076883‑M2/23‑1 (MQ=255) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 1:1460671/43‑1 (MQ=38) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:2732575/1‑70 (MQ=35) ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:3479952/1‑69 (MQ=35) cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:1340188/1‑39 (MQ=40) gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAg < 1:3158565/70‑1 (MQ=35) tccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg < 1:1548757‑M2/28‑1 (MQ=255) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc < 1:3667307/71‑1 (MQ=34) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTAct > 1:3051088/1‑71 (MQ=34) acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTAct < 1:490570/71‑1 (MQ=34) caGATAAAACGAAAGGCGCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTActc < 1:2866235/71‑1 (MQ=21) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTActc < 1:3234242/71‑1 (MQ=34) caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTActc < 1:2315988/71‑1 (MQ=34) aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCg < 1:415121/71‑1 (MQ=34) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCg > 1:4481881/1‑70 (MQ=35) | CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTCTCG > W3110S.gb/3464811‑3464948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |