| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 154410 = | 59 (1.050) | 4 (0.070) | 3/102 | NT | 6.7% | coding (1017/2598 nt) | htrE | predicted outer membrane usher protein |
| ? | W3110S.gb | 154431 = | 53 (0.940) | coding (996/2598 nt) | htrE | predicted outer membrane usher protein | |||||
CAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGA > W3110S.gb/154342‑154480 | cAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGc > 1:4296998/1‑70 (MQ=255) aCGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAt > 1:3127852/1‑71 (MQ=255) aCGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAt > 1:4423550/1‑71 (MQ=255) aCGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAt > 1:4576290/1‑71 (MQ=255) gTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCg > 1:1996529/1‑71 (MQ=255) tCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCg > 1:2676649/1‑70 (MQ=255) cAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGa > 1:3469919/1‑70 (MQ=255) cAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAt > 1:3251995/1‑71 (MQ=255) cAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAt > 1:3980420/1‑71 (MQ=255) aaCGCCAGGGCATAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAtt > 1:119416/1‑71 (MQ=255) aCGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttc < 1:256039/71‑1 (MQ=255) cGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttct < 1:2363412/71‑1 (MQ=255) cGCCACGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttct > 1:5065775/1‑71 (MQ=255) gCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttctt > 1:2824029/1‑71 (MQ=255) ccAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttcttc < 1:2217504/71‑1 (MQ=255) ccAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAttcttc < 1:3992395/71‑1 (MQ=255) aaCATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTaa > 1:3856882/1‑70 (MQ=255) aCATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAAc > 1:3021921/1‑70 (MQ=255) cATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACa > 1:4196909/1‑70 (MQ=255) aTTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGa < 1:4727979/53‑1 (MQ=255) aTTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACaa > 1:4989016/1‑70 (MQ=255) tttGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACa < 1:4289780/68‑1 (MQ=255) tttGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATa < 1:1122655/71‑1 (MQ=255) ttGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAtt > 1:1751669/1‑53 (MQ=255) ttGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACaa > 1:2378218/1‑68 (MQ=255) tGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAg > 1:215267/1‑42 (MQ=255) tGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAt > 1:4978362/1‑46 (MQ=255) tGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAAt > 1:497636/1‑68 (MQ=255) acaacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCg > 1:5127333/1‑54 (MQ=255) acaacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAAt > 1:2188835/1‑65 (MQ=255) acaacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATc < 1:1448141/71‑1 (MQ=255) acaacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATc < 1:1442216/71‑1 (MQ=255) caacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCg > 1:1115255/1‑71 (MQ=255) aacGGATGATAAAGGTTGCGAGAATTTCCGATTTGCGCCAt > 1:4867505/1‑41 (MQ=255) aacGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGc < 1:3420693/71‑1 (MQ=255) acGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCg > 1:3903711/1‑42 (MQ=255) gagtccgtcagggtacggcagcgatcttattgttGCCATCGGATTCTTCGATGGTAACa < 1:1994906‑M1/25‑1 (MQ=255) gagtccgtcagggtacggcagcgatcttattgttGCCATCGGATTCTTCGATGGTAACa < 1:4900620‑M1/25‑1 (MQ=255) cGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTg > 1:2410198/1‑71 (MQ=255) ggATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCg > 1:3129788/1‑40 (MQ=255) agtccgtcagggtacggcagcgatcttattgttGCCATCGGATTCTTCGATGGt > 1:177898‑M1/34‑54 (MQ=255) aTGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCg < 1:1038653/71‑1 (MQ=255) cgtcagggtacggcagcgatcttattgttGCCATCGGATTCTTCGATg < 1:2267255‑M1/19‑1 (MQ=255) agaAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTTACAATAAGATCGCTGCCGTAc > 1:137246/1‑71 (MQ=255) agaAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTAc < 1:4287059/71‑1 (MQ=255) gaAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTg < 1:3318162/64‑1 (MQ=255) gaAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTg < 1:1075173/64‑1 (MQ=255) aaaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATg < 1:3473184/45‑1 (MQ=255) aaaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTTACAATAAGa < 1:119518/57‑1 (MQ=255) aaaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTAccc > 1:805184/1‑71 (MQ=255) aaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAtt > 1:1318131/1‑36 (MQ=255) aaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCt < 1:751359/71‑1 (MQ=255) aaGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCt < 1:2271520/71‑1 (MQ=255) aGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCt > 1:2576822/1‑70 (MQ=255) gggtGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTg < 1:1741410/67‑1 (MQ=255) ggTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGa < 1:5020021/71‑1 (MQ=255) gTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATgg > 1:3612479/1‑42 (MQ=255) ttGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACg < 1:1928387/71‑1 (MQ=255) cGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGAc < 1:3912465/71‑1 (MQ=255) gaATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATa > 1:2364602/1‑43 (MQ=255) gaATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTg < 1:1019798/62‑1 (MQ=255) gaATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTg < 1:2889381/62‑1 (MQ=255) gaATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACt > 1:2278033/1‑69 (MQ=255) aaTGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAg < 1:1387136/71‑1 (MQ=255) aTGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAg < 1:2562367/70‑1 (MQ=255) tCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATaa > 1:1056556/1‑39 (MQ=255) tCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGAt > 1:686662/1‑42 (MQ=255) tCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGAt > 1:2504469/1‑42 (MQ=255) ccGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGatca < 1:407982/70‑1 (MQ=255) cGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGatcatc < 1:4691880/71‑1 (MQ=255) tttGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTg < 1:1563460/52‑1 (MQ=255) tttGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAAt > 1:3333676/1‑71 (MQ=255) tttGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAAt > 1:3119688/1‑71 (MQ=255) tGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCGTGACGGACTCAGATCATCAAt < 1:1066997/69‑1 (MQ=255) tGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCaa < 1:4653827/68‑1 (MQ=255) tGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAAt < 1:4195641/69‑1 (MQ=255) gCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGa < 1:3930562/71‑1 (MQ=255) | CAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGA > W3110S.gb/154342‑154480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |