| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 225680 = | 30 (0.530) | 4 (0.080) | 3/90 | NT | 13.1% | intergenic (+105/‑79) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA |
| ? | W3110S.gb | = 3468101 | NA (NA) | intergenic (‑61/+133) | rrlB/gltT | 23S ribosomal RNA/tRNA‑Glu | |||||
GTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTC > W3110S.gb/225611‑225749 | gcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacg > 1:479845‑M1/70‑70 (MQ=255)gcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacg > 1:4718021‑M1/70‑70 (MQ=255)gcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacg < 1:682212‑M1/1‑1 (MQ=255) cttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGaa > 1:4928017‑M1/69‑71 (MQ=255) cttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGa < 1:2990100‑M1/2‑1 (MQ=255) taacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc < 1:2182039‑M1/4‑1 (MQ=255) aacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc > 1:3470468‑M1/66‑69 (MQ=255) aacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc > 1:1711324‑M1/66‑69 (MQ=255) aacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc > 1:3162839‑M1/66‑69 (MQ=255) aacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACaa < 1:5158507‑M1/6‑1 (MQ=255) aacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACaa < 1:4474791‑M1/6‑1 (MQ=255) acctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACaa > 1:1416300‑M1/65‑70 (MQ=255) acctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACa > 1:4919987‑M1/65‑69 (MQ=255) cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATg > 1:460008/1‑70 (MQ=33) aaaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAt > 1:1955815/1‑68 (MQ=31) aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCATGCTGAAAATTGAAACACTGAACAATGa > 1:5100275/1‑69 (MQ=25) aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGa > 1:1393593/1‑69 (MQ=35) acaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGa < 1:4881634‑M1/2‑1 (MQ=255) aGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAg > 1:3744040/1‑71 (MQ=34) gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCATGCTGAAAATTGAAACACTGAACAATGAAAgtt < 1:1805714/71‑1 (MQ=21) aacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc > 1:4925123‑M1/58‑61 (MQ=255) acccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACa > 1:1673522‑M1/57‑61 (MQ=255) gaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACAACGAGAGTTGTTCg < 1:5092836‑M1/19‑1 (MQ=255) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGa > 1:1843182/1‑61 (MQ=35) tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAgttgt < 1:4927156/67‑1 (MQ=35) aagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGa > 1:107384‑M1/52‑53 (MQ=255) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGt > 1:708354/1‑70 (MQ=35) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGt > 1:1073413/1‑70 (MQ=35) agatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGaa < 1:1829633‑M1/3‑1 (MQ=255) agatgtttcttgcgatccatcatcgtgttgcgaaaatttgagagactcacGAACAATGAAAGTTGTTCGt > 1:4786760‑M1/51‑70 (MQ=255) cGAAGTTTTGCTCTTTTAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCg < 1:3741948/68‑1 (MQ=25) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTc < 1:923456/67‑1 (MQ=35) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTc < 1:1679842/67‑1 (MQ=35) aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGt < 1:3830361/71‑1 (MQ=34) gtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGa < 1:2115214‑M1/2‑1 (MQ=255) tttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAAc > 1:2421689‑M1/46‑49 (MQ=255) tttctttcgattcatcatcgtgttgcgaaaatttgagagactcacGAACaa > 1:1477138‑M1/46‑51 (MQ=255) ttcgattcatcatcgtgttgcgaaaatttgagagactcacGa > 1:2009803‑M1/41‑42 (MQ=255) cgattcatcatcgtgttgcgaaaatttgagagactcacg < 1:1642588‑M1/1‑1 (MQ=255) catcatcgtgttgcgaaaatttgagagactcacGAACa > 1:1734304‑M1/34‑38 (MQ=255) atcatcgtgttgcgaaaatttgagagactcacGAAc > 1:5132646‑M1/33‑36 (MQ=255) catcgtgttgcgaaaatttgagagactcacGAACa < 1:3943013‑M1/5‑1 (MQ=255) gtaTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga < 1:645506/69‑1 (MQ=21) gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:546493/71‑1 (MQ=34) gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:2179817/71‑1 (MQ=34) gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga > 1:4863320/1‑70 (MQ=35) ttgcgaaaatttgagagactcacGAACAATGAAAgttg > 1:1320458‑M1/24‑38 (MQ=255) aTCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca > 1:1713146/1‑66 (MQ=31) tCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga < 1:5019578/71‑1 (MQ=34) aaGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 1:113040/1‑71 (MQ=34) gaaaatttgagagactcacGAACAACGAAAGTTGTTc > 1:1127313‑M1/20‑37 (MQ=255) gCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGa < 1:2689839/71‑1 (MQ=38) cTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:2638383/64‑1 (MQ=35) tGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGa < 1:1674748/69‑1 (MQ=39) gAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg < 1:2539585/63‑1 (MQ=35) aaaaTTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCg > 1:2107206/1‑70 (MQ=40) aaaaTTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCg > 1:2810121/1‑70 (MQ=40) aaTTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGc > 1:1620124/1‑69 (MQ=255) tGACACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa > 1:4699081/1‑70 (MQ=255) aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:1549993/53‑1 (MQ=35) acacTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACa > 1:2145464/1‑70 (MQ=255) acacTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACAt < 1:4804982/71‑1 (MQ=255) cacTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATc > 1:2947616/1‑71 (MQ=255) acTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCt < 1:4370999/71‑1 (MQ=255) tGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTc > 1:2808747/1‑71 (MQ=255) GAACAATGAAAGTTGTTCGTGAGTCTCTCAAAttt > 1:2850098‑M1/1‑35 (MQ=255) GAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAg > 1:2228659‑M1/1‑60 (MQ=255) | GTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTC > W3110S.gb/225611‑225749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |