| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314454 = | NA (NA) | 4 (0.080) | 3/94 | NT | NA | coding (874/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 314485 = | NA (NA) | intergenic (+17/‑21) | eaeH/insE | attaching and effacing protein, pathogenesis factor/IS3 element protein | |||||
Only 100 of 174 total aligned reads displayed.
TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314385‑314521 | agatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt < 1:1424297‑M1/3‑1 (MQ=255) ttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct > 1:4484475/1‑70 (MQ=255) gatggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCtt > 1:3970544‑M1/68‑71 (MQ=255) ggaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc < 1:1068342‑M1/7‑1 (MQ=255) tAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc > 1:910868/1‑70 (MQ=255) gaaggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAcc > 1:1611190‑M1/64‑70 (MQ=255) aaaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc > 1:5081262/1‑69 (MQ=255) aaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAc > 1:3847070/1‑67 (MQ=255) gATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:852794/1‑69 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:4889976‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:783253‑M1/59‑71 (MQ=255) aTAAGCGCAAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa > 1:4789276/1‑71 (MQ=255) tAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:3986941/71‑1 (MQ=255) aGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa < 1:1017775/70‑1 (MQ=255) ggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAg > 1:560356‑M1/55‑70 (MQ=255) gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATa < 1:4573578/69‑1 (MQ=255) gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt < 1:3950450/71‑1 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:2693048‑M1/54‑71 (MQ=255) tttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:4472604‑M1/20‑1 (MQ=255) taccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGac > 1:3393440‑M1/50‑70 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:3655337/1‑56 (MQ=255) cgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGaca < 1:1578372‑M1/22‑1 (MQ=255) cgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACAcgc < 1:4343432‑M1/25‑1 (MQ=255) aaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCAAGCAATAGTg > 1:5188494/1‑64 (MQ=255) gtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTAc > 1:3575305‑M1/46‑51 (MQ=255) aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg > 1:1452240/1‑61 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:4396574/71‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:2530840‑M1/41‑70 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTCTACGCCAGTGCCTCTTACCCAg > 1:60799/1‑49 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct > 1:401290/1‑42 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:2221399/1‑71 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:1344084‑M1/20‑1 (MQ=255) aTGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:4262805/1‑59 (MQ=255) cttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:1975116‑M1/35‑71 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2274046/70‑1 (MQ=255) tATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:4660136/1‑70 (MQ=255) tATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:813546/1‑70 (MQ=255) tcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:3203865‑M1/33‑47 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgc > 1:5115777/1‑56 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2458707/69‑1 (MQ=255) tttCTGCCGAGGTGACATATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:952077/1‑67 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2349724‑M1/40‑1 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:4090581/43‑1 (MQ=255) cTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTgg > 1:1281913/1‑47 (MQ=255) acttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:4515233‑M1/29‑71 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2607033‑M1/44‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:5116503‑M1/28‑71 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:4345337‑M1/44‑1 (MQ=255) gCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:2187127/1‑35 (MQ=255) gCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg < 1:1481477/42‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:4034800/71‑1 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:3066411/1‑60 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:3403583‑M1/22‑71 (MQ=255) cgaggcgcgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:931263‑M1/20‑70 (MQ=255) cgaggcccgggattactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:35736‑M1/20‑71 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:2642782‑M1/20‑71 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:3080503‑M1/19‑71 (MQ=255) ggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:607127‑M1/17‑71 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:4607172/1‑60 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:2812795‑M1/55‑1 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:274498/53‑1 (MQ=255) ccgggatcactgaTCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:100188‑M1/57‑1 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:2014676‑M1/13‑51 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:3666437‑M1/13‑50 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:788977‑M1/13‑50 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:3415164‑M1/13‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3164299‑M1/59‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1106740‑M1/61‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:639447‑M1/61‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:5126471/71‑1 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1702705‑M1/61‑1 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:301057‑M1/61‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:4540262/55‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:3896771/1‑70 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTcac < 1:2220922/71‑1 (MQ=255) tcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:903450‑M1/8‑71 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:2726809/1‑71 (MQ=40) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2327701‑M1/53‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:4063282‑M1/53‑1 (MQ=255) gTGCCTATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3272281/64‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1221247‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:4730519‑M1/5‑59 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:737947‑M1/57‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2421246‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:3168037‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:4242095‑M1/45‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:2253060‑M1/4‑63 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3099912‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:3479332‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:2583369‑M1/61‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2468293‑M1/66‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:2100508‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:1527319/1‑70 (MQ=33) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1851040‑M1/2‑45 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:4844091‑M1/2‑65 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:4912788‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:4557329‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:2361281‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3562214‑M1/2‑69 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:4416801‑M1/69‑1 (MQ=255) | TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314385‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |