| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314454 = | NA (NA) | 4 (0.080) | 3/94 | NT | NA | coding (874/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 314485 = | NA (NA) | intergenic (+17/‑21) | eaeH/insE | attaching and effacing protein, pathogenesis factor/IS3 element protein | |||||
Only 100 of 103 total aligned reads displayed.
CTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314419‑314521 | cttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:1975116‑M1/35‑71 (MQ=255)cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:2274046/70‑1 (MQ=255) tATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:4660136/1‑70 (MQ=255) tATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:813546/1‑70 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:4173215/1‑67 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:2717234/1‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:1636908/1‑71 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa < 1:4004715/70‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2458707/69‑1 (MQ=255) tttCTGCCGAGGTGACATATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:952077/1‑67 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:2349724‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:5116090‑M1/32‑70 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:1244527/1‑65 (MQ=255) cacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:5151338‑M1/41‑1 (MQ=255) acttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:4515233‑M1/29‑71 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2607033‑M1/44‑1 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:5116503‑M1/28‑71 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:4345337‑M1/44‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:4760948/69‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:4034800/71‑1 (MQ=255) gAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:3066411/1‑60 (MQ=255) agcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:3403583‑M1/22‑71 (MQ=255) cgaggcgcgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag > 1:931263‑M1/20‑70 (MQ=255) cgaggcccgggattactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:35736‑M1/20‑71 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:2642782‑M1/20‑71 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:3080503‑M1/19‑71 (MQ=255) ggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:607127‑M1/17‑71 (MQ=255) ggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3854936‑M1/17‑71 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:4607172/1‑60 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:3012642/1‑71 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:2812795‑M1/55‑1 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:274498/53‑1 (MQ=255) tataCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:3567110/61‑1 (MQ=255) ccgggatcactgaTCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:100188‑M1/57‑1 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:2014676‑M1/13‑51 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:788977‑M1/13‑50 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:3666437‑M1/13‑50 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:4589860‑M1/59‑1 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:3415164‑M1/13‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3164299‑M1/59‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1106740‑M1/61‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1521196‑M1/61‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:639447‑M1/61‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:2049209/1‑45 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:594370/1‑50 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:5126471/71‑1 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:301057‑M1/61‑1 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1702705‑M1/61‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:4540262/55‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:3896771/1‑70 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTcac < 1:2220922/71‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:936910‑M1/9‑71 (MQ=255) tcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:903450‑M1/8‑71 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:4063282‑M1/53‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:2327701‑M1/53‑1 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca > 1:520975‑M1/8‑70 (MQ=255) acactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:4052284‑M1/60‑1 (MQ=255) cactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:2274912‑M1/64‑1 (MQ=255) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:2245897/64‑1 (MQ=39) gTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:1742344/1‑71 (MQ=38) gTGCCTATTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:3272281/64‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:80669‑M1/6‑40 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc < 1:4251545‑M1/49‑1 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1221247‑M1/66‑1 (MQ=255) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca < 1:316552/54‑1 (MQ=38) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTGAGAGGTGACTCACATGa < 1:2536976‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:4730519‑M1/5‑59 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:737947‑M1/57‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2421246‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:4242095‑M1/45‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:911630‑M1/4‑58 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:3092645‑M1/4‑63 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:2253060‑M1/4‑63 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3099912‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:66001‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:1025162‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:4505251‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:4266713‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:3479332‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2686347‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:1925744‑M1/54‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:4019357‑M1/62‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:2583369‑M1/61‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2468293‑M1/66‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:3397956‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:2100508‑M1/68‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:833283‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:1527319/1‑70 (MQ=33) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:4382075/1‑67 (MQ=31) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2469022‑M1/38‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1851040‑M1/2‑45 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:3233274‑M1/2‑51 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:4844091‑M1/2‑65 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:776303‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:4540615‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:869399‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:2361281‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:4912788‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:4557329‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3562214‑M1/2‑69 (MQ=255) | CTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314419‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |