| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2963582 = | 71 (1.260) | 4 (0.080) | 3/90 | NT | 6.8% | coding (230/795 nt) | thyA | thymidylate synthetase |
| ? | W3110S.gb | 2963610 = | 47 (0.950) | coding (202/795 nt) | thyA | thymidylate synthetase | |||||
GGCGCGCCACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGA > W3110S.gb/2963512‑2963652 | gtgacaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaa > 1:4623489‑M1/71‑71 (MQ=255)ggCGCGCCACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGa > 1:159003/1‑71 (MQ=255) tgacaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaa < 1:4351262‑M1/1‑1 (MQ=255) gacaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACa < 1:3926789‑M1/3‑1 (MQ=255) gacaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACa < 1:3609436‑M1/3‑1 (MQ=255) gcgcCACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACAt > 1:3718665/1‑71 (MQ=255) acaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACa > 1:4138479‑M1/68‑70 (MQ=255) acaactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACAt > 1:4352994‑M1/68‑71 (MQ=255) gcCACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTg < 1:115084/71‑1 (MQ=255) aactaaacgttgccacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACATTg < 1:3715301‑M1/6‑1 (MQ=255) cACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGtt > 1:2718025/1‑71 (MQ=255) aCTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGttt > 1:3779074/1‑71 (MQ=255) cTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGtttt < 1:4538875/71‑1 (MQ=255) cTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGtttt > 1:23922/1‑71 (MQ=255) tttACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCgt < 1:490151/71‑1 (MQ=255) tttACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCg < 1:1657907/70‑1 (MQ=255) tACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCgt > 1:4239674/1‑69 (MQ=255) cacctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACAtt > 1:1068364‑M1/53‑57 (MQ=255) cctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACa < 1:4468674‑M1/3‑1 (MQ=255) cctgcgttccatcatccatgaactgctgtggtttctgcagggcgacactaACa < 1:1625018‑M1/3‑1 (MQ=255) cacTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAg > 1:2152619/1‑71 (MQ=255) acTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAg > 1:4172157/1‑70 (MQ=255) acTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAg > 1:4653412/1‑70 (MQ=255) cTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCa < 1:3281377/71‑1 (MQ=255) tGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCaa > 1:2784463/1‑71 (MQ=255) cgttccatcatccatgaactgctgtggtttctgcagggcgacactaACATTGTTTTCGTGTAGATAAGCa > 1:2440987‑M1/47‑70 (MQ=255) ggCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACa > 1:4312089/1‑48 (MQ=255) ggCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACa > 1:5097738/1‑48 (MQ=255) ccatcatccatgaactgctgtggtttctgcagggcgacactaACATTGTTTTCGTGTAGATAAGCAATGt > 1:2608934‑M1/43‑70 (MQ=255) cGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGt > 1:3438316/1‑69 (MQ=255) cGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:3820937/71‑1 (MQ=255) cGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:63429/71‑1 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg > 1:2791406/1‑71 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg < 1:768155/71‑1 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg < 1:1591691/71‑1 (MQ=255) aGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgt > 1:4173907/1‑71 (MQ=255) gTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCg < 1:1445384/49‑1 (MQ=255) atccatgaactgctgtggtttctgcagggcgacactaACAt < 1:2413505‑M1/4‑1 (MQ=255) tCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTc < 1:2873770/71‑1 (MQ=255) cGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCg > 1:1488430/1‑71 (MQ=255) gCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:403268/64‑1 (MQ=255) gCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCg < 1:2170129/70‑1 (MQ=255) cGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgtgt > 1:5139059/1‑66 (MQ=255) gTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCt < 1:2140239/71‑1 (MQ=255) ttttCATCGGCCCATTCGTCCCAGATGGTGACAtt < 1:3752586/35‑1 (MQ=255) ttttCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTg > 1:4583137/1‑71 (MQ=255) aactgctgtggtttctggagggcgacactaACATTGTTTTCGTGTAGATAAGCa > 1:3343230‑M1/31‑54 (MQ=255) ttCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTc > 1:770468/1‑39 (MQ=255) ttCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTc > 1:1358343/1‑39 (MQ=255) ttCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTc > 1:4849688/1‑39 (MQ=255) tCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGc > 1:2185201/1‑50 (MQ=255) tCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGt < 1:517974/55‑1 (MQ=255) cATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa > 1:3197547/1‑56 (MQ=255) cATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAg < 1:5058021/70‑1 (MQ=255) aTCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGa < 1:3421259/70‑1 (MQ=255) aTCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGGCGCCCTGCAGa < 1:462590/70‑1 (MQ=255) tCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAg < 1:895918/46‑1 (MQ=255) ggCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAAcc < 1:1177330/71‑1 (MQ=255) gCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGt < 1:636164/49‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACcaca < 1:3185808/71‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACcaca < 1:4644337/71‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca > 1:886693/1‑69 (MQ=255) cATTCGTCCCAGATGGTGACATTGTTTTCGTGTAg < 1:4866447/35‑1 (MQ=255) cATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcag < 1:918480/71‑1 (MQ=255) cATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcag < 1:4519244/71‑1 (MQ=255) aTTCGTCCCAGATGGTGACATTGTTTTCGTGTAGAt < 1:1499799/36‑1 (MQ=255) aTTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGc < 1:2730090/40‑1 (MQ=255) aTTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGtt < 1:2944950/46‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGtt < 1:919868/45‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:3592829/46‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCt < 1:4074485/56‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca < 1:4157737/66‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca < 1:3551350/66‑1 (MQ=255) tCGTCCCAGATGGTGACATTGTTTTCGTGTATATAAGCAATGt < 1:670517/43‑1 (MQ=255) tCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:658159/45‑1 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGt > 1:4044864/1‑42 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAAc > 1:1516407/1‑62 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcagcag < 1:5187515/70‑1 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGt > 1:3545914/1‑71 (MQ=255) cGTCCCAGATGGTGACATTGTTTTAGTGTAGATAAG‑AATGTTAg > 1:4263763/1‑44 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgt > 1:2195206/1‑45 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg > 1:3941289/1‑44 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGt < 1:1316080/70‑1 (MQ=255) cagggcgacactaACATTGTTTTCGTGTAGATAAGc > 1:1370769‑M1/14‑36 (MQ=255) tCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:4430948/58‑1 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCa < 1:3499385/70‑1 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCAt > 1:5037220/1‑71 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCAt > 1:472461/1‑71 (MQ=255) gATGGTGACATTGTTTTCGTGTAGATATGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1872926/1‑71 (MQ=255) gATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1697475/1‑71 (MQ=255) aTGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat > 1:3605429/1‑71 (MQ=255) tGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:873705/51‑1 (MQ=255) tGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat < 1:4484063/70‑1 (MQ=255) ggTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga > 1:734955/1‑71 (MQ=255) gTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga < 1:1868614/70‑1 (MQ=255) gTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga < 1:2870037/70‑1 (MQ=255) tGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:4520744/48‑1 (MQ=255) ACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGatgatg < 1:825368‑M1/69‑1 (MQ=255) ACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGa > 1:4215129‑M1/1‑71 (MQ=255) | GGCGCGCCACTGTTTACCATACACTGGCCCGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGA > W3110S.gb/2963512‑2963652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |