| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2963582 = | 71 (1.260) | 4 (0.080) | 3/90 | NT | 6.8% | coding (230/795 nt) | thyA | thymidylate synthetase |
| ? | W3110S.gb | 2963610 = | 47 (0.950) | coding (202/795 nt) | thyA | thymidylate synthetase | |||||
CGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTCAC > W3110S.gb/2963541‑2963679 | cGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:63429/71‑1 (MQ=255)cGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:3820937/71‑1 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg > 1:2791406/1‑71 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg < 1:768155/71‑1 (MQ=255) gAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg < 1:1591691/71‑1 (MQ=255) aGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgt > 1:4173907/1‑71 (MQ=255) tCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTc < 1:2873770/71‑1 (MQ=255) cGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCg > 1:1488430/1‑71 (MQ=255) gCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:403268/64‑1 (MQ=255) gCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCg < 1:2170129/70‑1 (MQ=255) cGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgtgt > 1:5139059/1‑66 (MQ=255) gTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCt < 1:2140239/71‑1 (MQ=255) ttttCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTg > 1:4583137/1‑71 (MQ=255) cATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa > 1:3197547/1‑56 (MQ=255) cATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAg < 1:5058021/70‑1 (MQ=255) aTCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGa < 1:3421259/70‑1 (MQ=255) aTCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGGCGCCCTGCAGa < 1:462590/70‑1 (MQ=255) ggCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAAcc < 1:1177330/71‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACcaca < 1:4644337/71‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACcaca < 1:3185808/71‑1 (MQ=255) ccATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca > 1:886693/1‑69 (MQ=255) cATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcag < 1:4519244/71‑1 (MQ=255) cATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcag < 1:918480/71‑1 (MQ=255) aTTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGtt < 1:2944950/46‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGtt < 1:919868/45‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:3592829/46‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCt < 1:4074485/56‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca < 1:4157737/66‑1 (MQ=255) ttCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACca < 1:3551350/66‑1 (MQ=255) tCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTa < 1:658159/45‑1 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAAc > 1:1516407/1‑62 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCAcagcag < 1:5187515/70‑1 (MQ=255) cGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGt > 1:3545914/1‑71 (MQ=255) cGTCCCAGATGGTGACATTGTTTTAGTGTAGATAAG‑AATGTTAg > 1:4263763/1‑44 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAgt > 1:2195206/1‑45 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAg > 1:3941289/1‑44 (MQ=255) gTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGt < 1:1316080/70‑1 (MQ=255) tCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:4430948/58‑1 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCa < 1:3499385/70‑1 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCAt > 1:5037220/1‑71 (MQ=255) ccAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCAt > 1:472461/1‑71 (MQ=255) gATGGTGACATTGTTTTCGTGTAGATATGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1872926/1‑71 (MQ=255) gATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1697475/1‑71 (MQ=255) aTGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat > 1:3605429/1‑71 (MQ=255) tGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:873705/51‑1 (MQ=255) tGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat < 1:4484063/70‑1 (MQ=255) ggTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga > 1:734955/1‑71 (MQ=255) gTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga < 1:2870037/70‑1 (MQ=255) gTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgatga < 1:1868614/70‑1 (MQ=255) tGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGaa < 1:4520744/48‑1 (MQ=255) acattgcttatctacacgaaaacaatgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATgg > 1:2608934‑M2/29‑70 (MQ=255) ACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGatgatg < 1:825368‑M1/69‑1 (MQ=255) ACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGa > 1:4215129‑M1/1‑71 (MQ=255) TTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACg > 1:3848198‑M1/1‑71 (MQ=255) tgcttatctacacgaaaacaatgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACg > 1:2440987‑M2/25‑70 (MQ=255) tgcttatctacacgaaaacaatgtTAGTGTCGCCCTCCAGAAACCACAGCAGtt > 1:3343230‑M2/25‑54 (MQ=255) TGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat > 1:737938‑M1/1‑61 (MQ=255) TGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat > 1:261519‑M1/1‑61 (MQ=255) gcttatctacacgaaaacaatgtTAGTGTCGCCCTg > 1:1370769‑M2/24‑36 (MQ=255) GTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACg < 1:3036322‑M1/69‑1 (MQ=255) ttttCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAg < 1:742141/71‑1 (MQ=255) tttCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATg > 1:2886873/1‑55 (MQ=255) tttCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAgg > 1:3155600/1‑71 (MQ=255) ttCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCAt < 1:2049678/53‑1 (MQ=255) tCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGt < 1:290974/70‑1 (MQ=255) tCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGt < 1:42286/70‑1 (MQ=255) tCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGt < 1:717013/70‑1 (MQ=255) tCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTg > 1:1232629/1‑71 (MQ=255) cGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTg < 1:4093223/70‑1 (MQ=255) gtgtAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTgg > 1:4256824/1‑70 (MQ=255) tAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAAc > 1:3952119/1‑71 (MQ=255) tAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAAc < 1:3908279/71‑1 (MQ=255) aTAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGtt < 1:4057150/71‑1 (MQ=255) tAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCat > 1:2878848/1‑58 (MQ=255) tAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGtt > 1:1377922/1‑70 (MQ=255) aaGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1497121/1‑45 (MQ=255) aaGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGga > 1:1487673/1‑45 (MQ=255) aGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCa < 1:411017/40‑1 (MQ=255) aGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTa < 1:1992612/70‑1 (MQ=255) aGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAg < 1:4911328/71‑1 (MQ=255) aGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAg < 1:3357556/71‑1 (MQ=255) gCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGtt > 1:633568/1‑37 (MQ=255) caatgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGtt < 1:3715301‑M2/65‑1 (MQ=255) aatgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTg > 1:1068364‑M2/6‑57 (MQ=255) atgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGgat < 1:2413505‑M2/37‑1 (MQ=255) atgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGt > 1:4352994‑M2/5‑71 (MQ=255) tgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAgg < 1:1625018‑M2/50‑1 (MQ=255) tgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAgg < 1:4468674‑M2/50‑1 (MQ=255) tgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGt > 1:4138479‑M2/4‑70 (MQ=255) tgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTc < 1:3609436‑M2/68‑1 (MQ=255) tgtTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTc < 1:3926789‑M2/68‑1 (MQ=255) tTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTCa < 1:4351262‑M2/69‑1 (MQ=255) tTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTCAc > 1:4623489‑M2/2‑71 (MQ=255) | CGAGGTCGCCGTTTTCATCGGCCCATTCGTCCCAGATGGTGACATTGTTTTCGTGTAGATAAGCAATGTTAGTGTCGCCCTGCAGAAACCACAGCAGTTCATGGATGATGGAACGCAGGTGGCAACGTTTAGTTGTCAC > W3110S.gb/2963541‑2963679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |